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Protein
Homologs
Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
12107 and 12108 are separated by 313 nucleotides
12108 and 12109 overlap by 8 nucleotides
12109 and 12110 are separated by 566 nucleotides
12110 and 12111 are separated by 310 nucleotides
mRNA_3739: 12107 - HMMPfam-Rare lipoprotein A (RlpA)-like double-psi beta-barrel-PF03330,ProSiteProfiles-Expansin, family-45 endoglucanase-like domain profile.-PS50842,SUPERFAMILY--SSF50685, at 468,433 to 469,585
12107
mRNA_3740: 12108 - Hypothetical Protein, at 469,899 to 470,347
12108
mRNA_3741: 12109 - HMMPfam-Fungal Zn(2)-Cys(6) binuclear cluster domain-PF00172,HMMPfam-Fungal specific transcription factor domain-PF04082,ProSitePatterns-Zn(2)-C6 fungal-type DNA-binding domain signature.-PS00463,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SUPERFAMILY--SSF57701, at 470,340 to 473,925
12109
mRNA_3742: 12110 - SMART-Parallel beta-helix repeats-SM00710,SUPERFAMILY--SSF51126, at 474,492 to 476,469
12110
mRNA_3743: 12111 - K15289 SLC35F5 solute carrier family 35, member F5, at 476,780 to 478,513
12111
Group
Condition
mRNA
_3739
mRNA
_3740
mRNA
_3741
mRNA
_3742
mRNA
_3743
12107
12108
12109
12110
12111
ypd buoyancy
40 hrs No Buoyancy Separation
-1.4
-0.1
-0.6
-0.9
+0.1
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.1
-0.3
-1.6
-0.4
+0.1
facs on lipid accumulation
Sorted High BODIPY Gate
-0.1
-0.3
-0.5
-0.4
-0.3
facs on lipid accumulation
Sorted No BODIPY Gate
+0.1
+0.0
-1.1
-0.3
-0.0
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.4
+0.4
-0.6
-0.7
-0.5
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.1
+0.2
-0.4
-0.7
+0.0
growth on oleic acid
YNB Glucose
-0.2
+0.1
-0.7
+0.3
-0.2
auxotrophy
YNB Glucose 75mM Arginine
-0.3
+0.1
-0.7
+0.1
+0.1
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.8
-0.2
+0.1
+0.3
-0.0
ypd buoyancy
40 hrs High Buoyancy
-0.6
+0.2
-0.2
+0.2
+0.1
auxotrophy
YNB Glucose
-0.0
+0.0
-0.7
+0.2
+0.1
auxotrophy
YNB Glucose 75mM Methionine
-0.1
+0.0
-0.6
+0.2
+0.1
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.2
-0.3
+0.3
-0.1
+0.1
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.5
-0.2
+0.1
+0.4
-0.0
auxotrophy
Dropout Complete
+0.0
+0.3
-0.9
+0.4
+0.1
ypd buoyancy
40 hrs Median Buoyancy
-0.4
+0.0
+0.1
+0.3
-0.0
ypd buoyancy
40 hrs Low Buoyancy
-0.0
+0.1
-0.3
+0.2
+0.0
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.1
-0.1
+0.4
-0.4
+0.4
growth on ypd
YPD
+0.3
+0.1
+0.2
-0.1
+0.1
growth on oleic acid
YNB Oleic Acid
+0.4
+0.4
-0.3
+0.4
+0.0
growth on ricinoleic acid
YNB Glucose
+1.0
+0.2
-0.2
-0.1
+0.1
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