Fitness for 5 genes in Rhodosporidium toruloides IFO0880

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Top 21 experiments (either direction), sorted by average fitness

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500 nt 12107 and 12108 are separated by 313 nucleotides12108 and 12109 overlap by 8 nucleotides12109 and 12110 are separated by 566 nucleotides12110 and 12111 are separated by 310 nucleotides mRNA_3739: 12107 - HMMPfam-Rare lipoprotein A (RlpA)-like double-psi beta-barrel-PF03330,ProSiteProfiles-Expansin, family-45 endoglucanase-like domain profile.-PS50842,SUPERFAMILY--SSF50685, at 468,433 to 469,585 12107 mRNA_3740: 12108 - Hypothetical Protein, at 469,899 to 470,347 12108 mRNA_3741: 12109 - HMMPfam-Fungal Zn(2)-Cys(6) binuclear cluster domain-PF00172,HMMPfam-Fungal specific transcription factor domain-PF04082,ProSitePatterns-Zn(2)-C6 fungal-type DNA-binding domain signature.-PS00463,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SUPERFAMILY--SSF57701, at 470,340 to 473,925 12109 mRNA_3742: 12110 - SMART-Parallel beta-helix repeats-SM00710,SUPERFAMILY--SSF51126, at 474,492 to 476,469 12110 mRNA_3743: 12111 - K15289 SLC35F5 solute carrier family 35, member F5, at 476,780 to 478,513 12111
Group Condition mRNA_3739 mRNA_3740 mRNA_3741 mRNA_3742 mRNA_3743
12107 12108 12109 12110 12111
ypd buoyancy 40 hrs No Buoyancy Separation -1.4 -0.1 -0.6 -0.9 +0.1
facs on lipid accumulation Sorted Low BODIPY Gate -0.1 -0.3 -1.6 -0.4 +0.1
facs on lipid accumulation Sorted High BODIPY Gate -0.1 -0.3 -0.5 -0.4 -0.3
facs on lipid accumulation Sorted No BODIPY Gate +0.1 +0.0 -1.1 -0.3 -0.0
growth on ricinoleic acid YNB Ricinoleic Acid +0.4 +0.4 -0.6 -0.7 -0.5
growth on ricinoleic acid YNB Methylricinoleic Acid +0.1 +0.2 -0.4 -0.7 +0.0
growth on oleic acid YNB Glucose -0.2 +0.1 -0.7 +0.3 -0.2
auxotrophy YNB Glucose 75mM Arginine -0.3 +0.1 -0.7 +0.1 +0.1
buoyancy on lipid accumulation 40 hrs High Buoyancy -0.8 -0.2 +0.1 +0.3 -0.0
ypd buoyancy 40 hrs High Buoyancy -0.6 +0.2 -0.2 +0.2 +0.1
auxotrophy YNB Glucose -0.0 +0.0 -0.7 +0.2 +0.1
auxotrophy YNB Glucose 75mM Methionine -0.1 +0.0 -0.6 +0.2 +0.1
buoyancy on lipid accumulation 40 hrs No Buoyancy Separation -0.2 -0.3 +0.3 -0.1 +0.1
buoyancy on lipid accumulation 40 hrs Low Buoyancy -0.5 -0.2 +0.1 +0.4 -0.0
auxotrophy Dropout Complete +0.0 +0.3 -0.9 +0.4 +0.1
ypd buoyancy 40 hrs Median Buoyancy -0.4 +0.0 +0.1 +0.3 -0.0
ypd buoyancy 40 hrs Low Buoyancy -0.0 +0.1 -0.3 +0.2 +0.0
buoyancy on lipid accumulation 40 hrs Median Buoyancy -0.1 -0.1 +0.4 -0.4 +0.4
growth on ypd YPD +0.3 +0.1 +0.2 -0.1 +0.1
growth on oleic acid YNB Oleic Acid +0.4 +0.4 -0.3 +0.4 +0.0
growth on ricinoleic acid YNB Glucose +1.0 +0.2 -0.2 -0.1 +0.1
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