Fitness for 5 genes in Rhodosporidium toruloides IFO0880

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500 nt 12108 and 12109 overlap by 8 nucleotides12109 and 12110 are separated by 566 nucleotides12110 and 12111 are separated by 310 nucleotides12111 and 12112 are separated by 1046 nucleotides mRNA_3740: 12108 - Hypothetical Protein, at 469,899 to 470,347 12108 mRNA_3741: 12109 - HMMPfam-Fungal Zn(2)-Cys(6) binuclear cluster domain-PF00172,HMMPfam-Fungal specific transcription factor domain-PF04082,ProSitePatterns-Zn(2)-C6 fungal-type DNA-binding domain signature.-PS00463,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SUPERFAMILY--SSF57701, at 470,340 to 473,925 12109 mRNA_3742: 12110 - SMART-Parallel beta-helix repeats-SM00710,SUPERFAMILY--SSF51126, at 474,492 to 476,469 12110 mRNA_3743: 12111 - K15289 SLC35F5 solute carrier family 35, member F5, at 476,780 to 478,513 12111 mRNA_3744: 12112 - KOG0955 PHD finger protein BR140/LIN-49, at 479,560 to 485,967 12112
Group Condition mRNA_3740 mRNA_3741 mRNA_3742 mRNA_3743 mRNA_3744
12108 12109 12110 12111 12112
facs on lipid accumulation Sorted High BODIPY Gate -0.3 -0.5 -0.4 -0.3 -1.1
facs on lipid accumulation Sorted Low BODIPY Gate -0.3 -1.6 -0.4 +0.1 -0.3
facs on lipid accumulation Sorted No BODIPY Gate +0.0 -1.1 -0.3 -0.0 -0.8
ypd buoyancy 40 hrs No Buoyancy Separation -0.1 -0.6 -0.9 +0.1 -0.1
growth on ricinoleic acid YNB Ricinoleic Acid +0.4 -0.6 -0.7 -0.5 +0.2
growth on ricinoleic acid YNB Methylricinoleic Acid +0.2 -0.4 -0.7 +0.0 +0.5
auxotrophy YNB Glucose +0.0 -0.7 +0.2 +0.1 +0.2
growth on oleic acid YNB Glucose +0.1 -0.7 +0.3 -0.2 +0.4
ypd buoyancy 40 hrs Low Buoyancy +0.1 -0.3 +0.2 +0.0 -0.1
auxotrophy YNB Glucose 75mM Arginine +0.1 -0.7 +0.1 +0.1 +0.4
growth on ricinoleic acid YNB Glucose +0.2 -0.2 -0.1 +0.1 +0.1
buoyancy on lipid accumulation 40 hrs Low Buoyancy -0.2 +0.1 +0.4 -0.0 -0.1
buoyancy on lipid accumulation 40 hrs No Buoyancy Separation -0.3 +0.3 -0.1 +0.1 +0.3
ypd buoyancy 40 hrs High Buoyancy +0.2 -0.2 +0.2 +0.1 -0.0
auxotrophy YNB Glucose 75mM Methionine +0.0 -0.6 +0.2 +0.1 +0.5
ypd buoyancy 40 hrs Median Buoyancy +0.0 +0.1 +0.3 -0.0 -0.1
growth on ypd YPD +0.1 +0.2 -0.1 +0.1 -0.1
auxotrophy Dropout Complete +0.3 -0.9 +0.4 +0.1 +0.6
buoyancy on lipid accumulation 40 hrs High Buoyancy -0.2 +0.1 +0.3 -0.0 +0.5
buoyancy on lipid accumulation 40 hrs Median Buoyancy -0.1 +0.4 -0.4 +0.4 +0.7
growth on oleic acid YNB Oleic Acid +0.4 -0.3 +0.4 +0.0 +0.8
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