Fitness for 5 genes in Rhodosporidium toruloides IFO0880

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Top 21 experiments (either direction), sorted by average fitness

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500 nt 12109 and 12110 are separated by 566 nucleotides12110 and 12111 are separated by 310 nucleotides12111 and 12112 are separated by 1046 nucleotides12112 and 12113 are separated by 241 nucleotides mRNA_3741: 12109 - HMMPfam-Fungal Zn(2)-Cys(6) binuclear cluster domain-PF00172,HMMPfam-Fungal specific transcription factor domain-PF04082,ProSitePatterns-Zn(2)-C6 fungal-type DNA-binding domain signature.-PS00463,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SUPERFAMILY--SSF57701, at 470,340 to 473,925 12109 mRNA_3742: 12110 - SMART-Parallel beta-helix repeats-SM00710,SUPERFAMILY--SSF51126, at 474,492 to 476,469 12110 mRNA_3743: 12111 - K15289 SLC35F5 solute carrier family 35, member F5, at 476,780 to 478,513 12111 mRNA_3744: 12112 - KOG0955 PHD finger protein BR140/LIN-49, at 479,560 to 485,967 12112 mRNA_3745: 12113 - BLAST protein of unknown function [Taphrina deformans PYCC ..., at 486,209 to 486,880 12113
Group Condition mRNA_3741 mRNA_3742 mRNA_3743 mRNA_3744 mRNA_3745
12109 12110 12111 12112 12113
ypd buoyancy 40 hrs No Buoyancy Separation -0.6 -0.9 +0.1 -0.1 -1.2
growth on ricinoleic acid YNB Ricinoleic Acid -0.6 -0.7 -0.5 +0.2 -0.7
growth on ricinoleic acid YNB Methylricinoleic Acid -0.4 -0.7 +0.0 +0.5 -1.1
facs on lipid accumulation Sorted High BODIPY Gate -0.5 -0.4 -0.3 -1.1 +0.8
auxotrophy Dropout Complete -0.9 +0.4 +0.1 +0.6 -1.6
auxotrophy YNB Glucose -0.7 +0.2 +0.1 +0.2 -1.3
auxotrophy YNB Glucose 75mM Arginine -0.7 +0.1 +0.1 +0.4 -1.3
facs on lipid accumulation Sorted Low BODIPY Gate -1.6 -0.4 +0.1 -0.3 +0.8
facs on lipid accumulation Sorted No BODIPY Gate -1.1 -0.3 -0.0 -0.8 +0.9
ypd buoyancy 40 hrs Low Buoyancy -0.3 +0.2 +0.0 -0.1 -0.6
growth on ricinoleic acid YNB Glucose -0.2 -0.1 +0.1 +0.1 -0.4
growth on oleic acid YNB Glucose -0.7 +0.3 -0.2 +0.4 -0.1
auxotrophy YNB Glucose 75mM Methionine -0.6 +0.2 +0.1 +0.5 -0.4
buoyancy on lipid accumulation 40 hrs Low Buoyancy +0.1 +0.4 -0.0 -0.1 -0.6
buoyancy on lipid accumulation 40 hrs No Buoyancy Separation +0.3 -0.1 +0.1 +0.3 -0.4
growth on oleic acid YNB Oleic Acid -0.3 +0.4 +0.0 +0.8 -0.6
buoyancy on lipid accumulation 40 hrs High Buoyancy +0.1 +0.3 -0.0 +0.5 -0.5
growth on ypd YPD +0.2 -0.1 +0.1 -0.1 +0.3
ypd buoyancy 40 hrs Median Buoyancy +0.1 +0.3 -0.0 -0.1 +0.4
buoyancy on lipid accumulation 40 hrs Median Buoyancy +0.4 -0.4 +0.4 +0.7 -0.3
ypd buoyancy 40 hrs High Buoyancy -0.2 +0.2 +0.1 -0.0 +0.7
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