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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
12109 and 12110 are separated by 566 nucleotides
12110 and 12111 are separated by 310 nucleotides
12111 and 12112 are separated by 1046 nucleotides
12112 and 12113 are separated by 241 nucleotides
mRNA_3741: 12109 - HMMPfam-Fungal Zn(2)-Cys(6) binuclear cluster domain-PF00172,HMMPfam-Fungal specific transcription factor domain-PF04082,ProSitePatterns-Zn(2)-C6 fungal-type DNA-binding domain signature.-PS00463,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SUPERFAMILY--SSF57701, at 470,340 to 473,925
12109
mRNA_3742: 12110 - SMART-Parallel beta-helix repeats-SM00710,SUPERFAMILY--SSF51126, at 474,492 to 476,469
12110
mRNA_3743: 12111 - K15289 SLC35F5 solute carrier family 35, member F5, at 476,780 to 478,513
12111
mRNA_3744: 12112 - KOG0955 PHD finger protein BR140/LIN-49, at 479,560 to 485,967
12112
mRNA_3745: 12113 - BLAST protein of unknown function [Taphrina deformans PYCC ..., at 486,209 to 486,880
12113
Group
Condition
mRNA
_3741
mRNA
_3742
mRNA
_3743
mRNA
_3744
mRNA
_3745
12109
12110
12111
12112
12113
ypd buoyancy
40 hrs No Buoyancy Separation
-0.6
-0.9
+0.1
-0.1
-1.2
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.6
-0.7
-0.5
+0.2
-0.7
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.4
-0.7
+0.0
+0.5
-1.1
facs on lipid accumulation
Sorted High BODIPY Gate
-0.5
-0.4
-0.3
-1.1
+0.8
auxotrophy
Dropout Complete
-0.9
+0.4
+0.1
+0.6
-1.6
auxotrophy
YNB Glucose
-0.7
+0.2
+0.1
+0.2
-1.3
auxotrophy
YNB Glucose 75mM Arginine
-0.7
+0.1
+0.1
+0.4
-1.3
facs on lipid accumulation
Sorted Low BODIPY Gate
-1.6
-0.4
+0.1
-0.3
+0.8
facs on lipid accumulation
Sorted No BODIPY Gate
-1.1
-0.3
-0.0
-0.8
+0.9
ypd buoyancy
40 hrs Low Buoyancy
-0.3
+0.2
+0.0
-0.1
-0.6
growth on ricinoleic acid
YNB Glucose
-0.2
-0.1
+0.1
+0.1
-0.4
growth on oleic acid
YNB Glucose
-0.7
+0.3
-0.2
+0.4
-0.1
auxotrophy
YNB Glucose 75mM Methionine
-0.6
+0.2
+0.1
+0.5
-0.4
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.1
+0.4
-0.0
-0.1
-0.6
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.3
-0.1
+0.1
+0.3
-0.4
growth on oleic acid
YNB Oleic Acid
-0.3
+0.4
+0.0
+0.8
-0.6
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.1
+0.3
-0.0
+0.5
-0.5
growth on ypd
YPD
+0.2
-0.1
+0.1
-0.1
+0.3
ypd buoyancy
40 hrs Median Buoyancy
+0.1
+0.3
-0.0
-0.1
+0.4
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.4
-0.4
+0.4
+0.7
-0.3
ypd buoyancy
40 hrs High Buoyancy
-0.2
+0.2
+0.1
-0.0
+0.7
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