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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
12113 and 12114 are separated by 246 nucleotides
12114 and 12115 are separated by 749 nucleotides
12115 and 12116 are separated by 808 nucleotides
12116 and 12117 are separated by 377 nucleotides
mRNA_3745: 12113 - BLAST protein of unknown function [Taphrina deformans PYCC ..., at 486,209 to 486,880
12113
mRNA_3746: 12114 - Hypothetical Protein, at 487,127 to 488,004
12114
mRNA_3747: 12115 - Hypothetical Protein, at 488,754 to 489,655
12115
mRNA_3748: 12116 - K00658 DLST, sucB 2-oxoglutarate dehydrogenase E2 component (dihydrolipoamide succinyltransferase), at 490,464 to 492,382
12116
mRNA_3749: 12117 - HMMPfam-Nuclear pore complex assembly-PF13934,SUPERFAMILY--SSF57850, at 492,760 to 497,695
12117
Group
Condition
mRNA
_3745
mRNA
_3746
mRNA
_3747
mRNA
_3748
mRNA
_3749
12113
12114
12115
12116
12117
ypd buoyancy
40 hrs No Buoyancy Separation
-1.2
-1.3
-0.2
N.D.
+0.1
auxotrophy
Dropout Complete
-1.6
-0.5
-0.1
N.D.
-0.2
growth on ricinoleic acid
YNB Methylricinoleic Acid
-1.1
-0.3
-0.3
N.D.
-0.3
auxotrophy
YNB Glucose
-1.3
-0.2
-0.1
N.D.
-0.3
auxotrophy
YNB Glucose 75mM Arginine
-1.3
+0.1
-0.1
N.D.
-0.2
growth on oleic acid
YNB Oleic Acid
-0.6
-0.4
-0.1
N.D.
-0.2
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.8
-1.3
-0.1
N.D.
-0.6
ypd buoyancy
40 hrs Low Buoyancy
-0.6
-0.1
-0.3
N.D.
-0.1
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.7
+0.3
-0.1
N.D.
-0.3
auxotrophy
YNB Glucose 75mM Methionine
-0.4
+0.1
-0.2
N.D.
-0.2
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.4
-0.2
-0.1
N.D.
+0.0
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.5
+0.0
-0.1
N.D.
-0.1
growth on ricinoleic acid
YNB Glucose
-0.4
+0.3
-0.3
N.D.
-0.2
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.6
-0.1
+0.2
N.D.
+0.0
ypd buoyancy
40 hrs Median Buoyancy
+0.4
-0.4
-0.2
N.D.
-0.0
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.3
+0.1
+0.2
N.D.
-0.2
growth on oleic acid
YNB Glucose
-0.1
+0.3
-0.0
N.D.
-0.2
ypd buoyancy
40 hrs High Buoyancy
+0.7
-0.4
-0.2
N.D.
+0.0
growth on ypd
YPD
+0.3
+0.4
-0.3
N.D.
+0.0
facs on lipid accumulation
Sorted No BODIPY Gate
+0.9
-0.2
+0.4
N.D.
-0.2
facs on lipid accumulation
Sorted High BODIPY Gate
+0.8
+0.8
-0.0
N.D.
-0.7
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