Fitness for 5 genes in Rhodosporidium toruloides IFO0880

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Top 21 experiments (either direction), sorted by average fitness

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500 nt 12117 and 12118 are separated by 84 nucleotides12118 and 12119 are separated by 227 nucleotides12119 and 12120 are separated by 190 nucleotides12120 and 12121 are separated by 176 nucleotides mRNA_3749: 12117 - HMMPfam-Nuclear pore complex assembly-PF13934,SUPERFAMILY--SSF57850, at 492,760 to 497,695 12117 mRNA_3750: 12118 - K13421 UMPS uridine monophosphate synthetase, at 497,780 to 498,794 12118 mRNA_3751: 12119 - K11348 BRPF1 bromodomain and PHD finger-containing protein 1, at 499,022 to 503,388 12119 mRNA_3752: 12120 - HMMPfam-GDP-fucose protein O-fucosyltransferase-PF10250, at 503,579 to 505,478 12120 mRNA_3753: 12121 - K00728 POMT dolichyl-phosphate-mannose-protein mannosyltransferase, at 505,655 to 508,720 12121
Group Condition mRNA_3749 mRNA_3750 mRNA_3751 mRNA_3752 mRNA_3753
12117 12118 12119 12120 12121
facs on lipid accumulation Sorted Low BODIPY Gate -0.6 N.D. -0.1 -0.2 -3.7
buoyancy on lipid accumulation 40 hrs High Buoyancy -0.1 N.D. +0.3 +0.1 -1.7
facs on lipid accumulation Sorted No BODIPY Gate -0.2 N.D. -0.4 +0.4 -0.9
buoyancy on lipid accumulation 40 hrs Median Buoyancy -0.2 N.D. -0.0 +0.3 -0.8
ypd buoyancy 40 hrs Median Buoyancy -0.0 N.D. -0.1 +0.3 -0.9
ypd buoyancy 40 hrs No Buoyancy Separation +0.1 N.D. +0.1 +0.2 -0.7
buoyancy on lipid accumulation 40 hrs No Buoyancy Separation +0.0 N.D. -0.0 +0.1 -0.2
ypd buoyancy 40 hrs High Buoyancy +0.0 N.D. +0.1 +0.3 -0.5
buoyancy on lipid accumulation 40 hrs Low Buoyancy +0.0 N.D. -0.4 +0.0 +0.3
growth on ypd YPD +0.0 N.D. +0.1 -0.1 +0.2
auxotrophy YNB Glucose 75mM Arginine -0.2 N.D. -0.1 +0.1 +0.5
auxotrophy YNB Glucose 75mM Methionine -0.2 N.D. -0.0 -0.0 +0.5
auxotrophy Dropout Complete -0.2 N.D. -0.3 +0.1 +0.8
auxotrophy YNB Glucose -0.3 N.D. -0.2 +0.1 +0.9
facs on lipid accumulation Sorted High BODIPY Gate -0.7 N.D. -0.4 +0.2 +1.7
growth on oleic acid YNB Oleic Acid -0.2 N.D. +0.1 +0.1 +1.0
growth on oleic acid YNB Glucose -0.2 N.D. +0.2 +0.1 +1.0
growth on ricinoleic acid YNB Glucose -0.2 N.D. -0.0 +0.3 +1.3
ypd buoyancy 40 hrs Low Buoyancy -0.1 N.D. -0.2 +0.3 +1.5
growth on ricinoleic acid YNB Ricinoleic Acid -0.3 N.D. -0.2 +0.6 +2.0
growth on ricinoleic acid YNB Methylricinoleic Acid -0.3 N.D. +0.0 +0.1 +2.5
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