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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
12119 and 12120 are separated by 190 nucleotides
12120 and 12121 are separated by 176 nucleotides
12121 and 12122 are separated by 319 nucleotides
12122 and 12123 are separated by 334 nucleotides
mRNA_3751: 12119 - K11348 BRPF1 bromodomain and PHD finger-containing protein 1, at 499,022 to 503,388
12119
mRNA_3752: 12120 - HMMPfam-GDP-fucose protein O-fucosyltransferase-PF10250, at 503,579 to 505,478
12120
mRNA_3753: 12121 - K00728 POMT dolichyl-phosphate-mannose-protein mannosyltransferase, at 505,655 to 508,720
12121
mRNA_3754: 12122 - K01641 E2.3.3.10 hydroxymethylglutaryl-CoA synthase, at 509,040 to 510,998
12122
mRNA_3755: 12123 - K01893 NARS, asnS asparaginyl-tRNA synthetase, at 511,333 to 513,065
12123
Group
Condition
mRNA
_3751
mRNA
_3752
mRNA
_3753
mRNA
_3754
mRNA
_3755
12119
12120
12121
12122
12123
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.1
-0.2
-3.7
N.D.
N.D.
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.3
+0.1
-1.7
N.D.
N.D.
facs on lipid accumulation
Sorted No BODIPY Gate
-0.4
+0.4
-0.9
N.D.
N.D.
ypd buoyancy
40 hrs Median Buoyancy
-0.1
+0.3
-0.9
N.D.
N.D.
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.0
+0.3
-0.8
N.D.
N.D.
ypd buoyancy
40 hrs No Buoyancy Separation
+0.1
+0.2
-0.7
N.D.
N.D.
ypd buoyancy
40 hrs High Buoyancy
+0.1
+0.3
-0.5
N.D.
N.D.
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.0
+0.1
-0.2
N.D.
N.D.
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.4
+0.0
+0.3
N.D.
N.D.
growth on ypd
YPD
+0.1
-0.1
+0.2
N.D.
N.D.
auxotrophy
YNB Glucose 75mM Methionine
-0.0
-0.0
+0.5
N.D.
N.D.
auxotrophy
YNB Glucose 75mM Arginine
-0.1
+0.1
+0.5
N.D.
N.D.
auxotrophy
Dropout Complete
-0.3
+0.1
+0.8
N.D.
N.D.
auxotrophy
YNB Glucose
-0.2
+0.1
+0.9
N.D.
N.D.
growth on oleic acid
YNB Oleic Acid
+0.1
+0.1
+1.0
N.D.
N.D.
growth on oleic acid
YNB Glucose
+0.2
+0.1
+1.0
N.D.
N.D.
facs on lipid accumulation
Sorted High BODIPY Gate
-0.4
+0.2
+1.7
N.D.
N.D.
growth on ricinoleic acid
YNB Glucose
-0.0
+0.3
+1.3
N.D.
N.D.
ypd buoyancy
40 hrs Low Buoyancy
-0.2
+0.3
+1.5
N.D.
N.D.
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.2
+0.6
+2.0
N.D.
N.D.
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.0
+0.1
+2.5
N.D.
N.D.
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