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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
12123 and 12124 are separated by 72 nucleotides
12124 and 12125 are separated by 552 nucleotides
12125 and 12126 are separated by 849 nucleotides
12126 and 12127 are separated by 86 nucleotides
mRNA_3755: 12123 - K01893 NARS, asnS asparaginyl-tRNA synthetase, at 511,333 to 513,065
12123
mRNA_3756: 12124 - HMMPfam-Protein of unknown function (DUF2665)-PF11654, at 513,138 to 513,518
12124
mRNA_3757: 12125 - Hypothetical Protein, at 514,071 to 514,868
12125
mRNA_3758: 12126 - HMMPfam-Glycosyl hydrolases family 15-PF00723,SUPERFAMILY--SSF48208, at 515,718 to 518,534
12126
mRNA_3759: 12127 - Hypothetical Protein, at 518,621 to 520,492
12127
Group
Condition
mRNA
_3755
mRNA
_3756
mRNA
_3757
mRNA
_3758
mRNA
_3759
12123
12124
12125
12126
12127
facs on lipid accumulation
Sorted Low BODIPY Gate
N.D.
-0.6
N.D.
-1.7
-0.1
buoyancy on lipid accumulation
40 hrs High Buoyancy
N.D.
-0.7
N.D.
-0.3
-0.5
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
N.D.
-0.9
N.D.
-0.5
-0.0
ypd buoyancy
40 hrs Low Buoyancy
N.D.
-0.6
N.D.
-0.2
-0.1
growth on ricinoleic acid
YNB Ricinoleic Acid
N.D.
-0.6
N.D.
-0.4
+0.2
buoyancy on lipid accumulation
40 hrs Median Buoyancy
N.D.
-0.5
N.D.
-0.2
-0.0
auxotrophy
YNB Glucose 75mM Arginine
N.D.
-0.3
N.D.
-0.2
-0.1
facs on lipid accumulation
Sorted No BODIPY Gate
N.D.
+0.1
N.D.
-0.6
-0.1
ypd buoyancy
40 hrs High Buoyancy
N.D.
-0.3
N.D.
+0.0
-0.1
auxotrophy
YNB Glucose 75mM Methionine
N.D.
+0.1
N.D.
-0.2
-0.2
ypd buoyancy
40 hrs No Buoyancy Separation
N.D.
-0.2
N.D.
-0.2
+0.1
growth on ricinoleic acid
YNB Methylricinoleic Acid
N.D.
+0.1
N.D.
-0.4
+0.0
growth on oleic acid
YNB Glucose
N.D.
+0.1
N.D.
-0.2
-0.0
growth on oleic acid
YNB Oleic Acid
N.D.
+0.3
N.D.
-0.2
-0.2
growth on ricinoleic acid
YNB Glucose
N.D.
-0.1
N.D.
+0.2
-0.1
buoyancy on lipid accumulation
40 hrs Low Buoyancy
N.D.
-0.1
N.D.
+0.1
+0.1
auxotrophy
Dropout Complete
N.D.
+0.3
N.D.
-0.0
-0.1
auxotrophy
YNB Glucose
N.D.
+0.6
N.D.
+0.2
-0.4
ypd buoyancy
40 hrs Median Buoyancy
N.D.
+0.6
N.D.
+0.0
-0.2
facs on lipid accumulation
Sorted High BODIPY Gate
N.D.
+0.5
N.D.
+0.4
+0.1
growth on ypd
YPD
N.D.
+1.9
N.D.
+0.2
+0.4
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