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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
12124 and 12125 are separated by 552 nucleotides
12125 and 12126 are separated by 849 nucleotides
12126 and 12127 are separated by 86 nucleotides
12127 and 12128 are separated by 568 nucleotides
mRNA_3756: 12124 - HMMPfam-Protein of unknown function (DUF2665)-PF11654, at 513,138 to 513,518
12124
mRNA_3757: 12125 - Hypothetical Protein, at 514,071 to 514,868
12125
mRNA_3758: 12126 - HMMPfam-Glycosyl hydrolases family 15-PF00723,SUPERFAMILY--SSF48208, at 515,718 to 518,534
12126
mRNA_3759: 12127 - Hypothetical Protein, at 518,621 to 520,492
12127
mRNA_3760: 12128 - K10746 EXO1 exonuclease 1, at 521,061 to 522,364
12128
Group
Condition
mRNA
_3756
mRNA
_3757
mRNA
_3758
mRNA
_3759
mRNA
_3760
12124
12125
12126
12127
12128
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.6
N.D.
-1.7
-0.1
-0.5
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.6
N.D.
-0.4
+0.2
-1.0
ypd buoyancy
40 hrs No Buoyancy Separation
-0.2
N.D.
-0.2
+0.1
-1.1
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.7
N.D.
-0.3
-0.5
+0.3
facs on lipid accumulation
Sorted No BODIPY Gate
+0.1
N.D.
-0.6
-0.1
-0.6
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.1
N.D.
-0.4
+0.0
-0.9
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.9
N.D.
-0.5
-0.0
+0.3
growth on oleic acid
YNB Oleic Acid
+0.3
N.D.
-0.2
-0.2
-0.8
auxotrophy
YNB Glucose 75mM Methionine
+0.1
N.D.
-0.2
-0.2
-0.5
growth on ricinoleic acid
YNB Glucose
-0.1
N.D.
+0.2
-0.1
-0.8
growth on oleic acid
YNB Glucose
+0.1
N.D.
-0.2
-0.0
-0.5
ypd buoyancy
40 hrs Low Buoyancy
-0.6
N.D.
-0.2
-0.1
+0.4
facs on lipid accumulation
Sorted High BODIPY Gate
+0.5
N.D.
+0.4
+0.1
-1.5
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.5
N.D.
-0.2
-0.0
+0.4
auxotrophy
YNB Glucose 75mM Arginine
-0.3
N.D.
-0.2
-0.1
+0.3
ypd buoyancy
40 hrs High Buoyancy
-0.3
N.D.
+0.0
-0.1
+0.1
auxotrophy
YNB Glucose
+0.6
N.D.
+0.2
-0.4
-0.3
auxotrophy
Dropout Complete
+0.3
N.D.
-0.0
-0.1
+0.3
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.1
N.D.
+0.1
+0.1
+0.5
ypd buoyancy
40 hrs Median Buoyancy
+0.6
N.D.
+0.0
-0.2
+0.3
growth on ypd
YPD
+1.9
N.D.
+0.2
+0.4
+0.1
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