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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
12132 and 12133 are separated by 154 nucleotides
12133 and 12134 are separated by 100 nucleotides
12134 and 12135 are separated by 155 nucleotides
12135 and 12136 are separated by 173 nucleotides
mRNA_3764: 12132 - K11808 ADE2 phosphoribosylaminoimidazole carboxylase, at 531,400 to 533,650
12132
mRNA_3765: 12133 - K02902 RP-L28, MRPL28, rpmB large subunit ribosomal protein L28, at 533,805 to 534,326
12133
mRNA_3766: 12134 - K20372 TBC1D20, GYP8 TBC1 domain family member 20, at 534,427 to 536,780
12134
mRNA_3767: 12135 - KOG4535 HEAT and armadillo repeat-containing protein, at 536,936 to 539,895
12135
mRNA_3768: 12136 - HMMPfam-Protein of unknown function (DUF1275)-PF06912, at 540,069 to 541,238
12136
Group
Condition
mRNA
_3764
mRNA
_3765
mRNA
_3766
mRNA
_3767
mRNA
_3768
12132
12133
12134
12135
12136
ypd buoyancy
40 hrs No Buoyancy Separation
N.D.
N.D.
-0.5
-0.7
+0.7
growth on ricinoleic acid
YNB Glucose
N.D.
N.D.
+0.1
-0.0
-0.4
ypd buoyancy
40 hrs Low Buoyancy
N.D.
N.D.
-0.1
-0.1
-0.1
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
N.D.
N.D.
+0.1
-0.1
-0.3
growth on ricinoleic acid
YNB Ricinoleic Acid
N.D.
N.D.
-0.1
+0.2
-0.4
growth on oleic acid
YNB Oleic Acid
N.D.
N.D.
+0.3
+0.1
-0.6
growth on ricinoleic acid
YNB Methylricinoleic Acid
N.D.
N.D.
+0.1
-0.0
-0.2
ypd buoyancy
40 hrs Median Buoyancy
N.D.
N.D.
-0.0
-0.1
+0.1
growth on ypd
YPD
N.D.
N.D.
-0.4
+0.6
-0.3
buoyancy on lipid accumulation
40 hrs High Buoyancy
N.D.
N.D.
+0.2
-0.1
-0.0
facs on lipid accumulation
Sorted High BODIPY Gate
N.D.
N.D.
+0.0
-0.1
+0.2
ypd buoyancy
40 hrs High Buoyancy
N.D.
N.D.
-0.2
+0.2
+0.1
facs on lipid accumulation
Sorted No BODIPY Gate
N.D.
N.D.
-0.2
-0.1
+0.4
buoyancy on lipid accumulation
40 hrs Median Buoyancy
N.D.
N.D.
+0.1
-0.2
+0.2
growth on oleic acid
YNB Glucose
N.D.
N.D.
+0.3
+0.1
-0.2
facs on lipid accumulation
Sorted Low BODIPY Gate
N.D.
N.D.
-0.1
-0.2
+0.4
auxotrophy
Dropout Complete
N.D.
N.D.
+0.4
+0.1
-0.2
buoyancy on lipid accumulation
40 hrs Low Buoyancy
N.D.
N.D.
+0.2
-0.1
+0.2
auxotrophy
YNB Glucose 75mM Arginine
N.D.
N.D.
+0.2
-0.1
+0.3
auxotrophy
YNB Glucose 75mM Methionine
N.D.
N.D.
+0.4
-0.1
+0.1
auxotrophy
YNB Glucose
N.D.
N.D.
+0.1
+0.3
+0.1
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