Fitness for 5 genes in Rhodosporidium toruloides IFO0880

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Top 21 experiments (either direction), sorted by average fitness

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500 nt 12140 and 12141 are separated by 157 nucleotides12141 and 12142 are separated by 1622 nucleotides12142 and 12143 are separated by 663 nucleotides12143 and 12144 are separated by 292 nucleotides mRNA_3772: 12140 - K17662 CBP3, UQCC cytochrome b pre-mRNA-processing protein 3, at 546,453 to 547,644 12140 mRNA_3773: 12141 - BLAST transmembrane protein, putative [Rhizoctonia solani A..., at 547,802 to 549,606 12141 mRNA_3774: 12142 - K01764 E4.4.1.17 cytochrome c heme-lyase, at 551,229 to 552,274 12142 mRNA_3775: 12143 - KOG2913 Predicted membrane protein, at 552,938 to 553,662 12143 mRNA_3776: 12144 - HMMPfam-FHA domain-PF00498,HMMPfam-Ring finger domain-PF13639,ProSiteProfiles-Forkhead-associated (FHA) domain profile.-PS50006,ProSiteProfiles-Zinc finger RING-type profile.-PS50089,SMART-Ring finger-SM00184,SMART-Forkhead associated domain-SM00240,SUPERFAMILY--SSF49879,SUPERFAMILY--SSF57850, at 553,955 to 556,574 12144
Group Condition mRNA_3772 mRNA_3773 mRNA_3774 mRNA_3775 mRNA_3776
12140 12141 12142 12143 12144
growth on ricinoleic acid YNB Methylricinoleic Acid -2.4 +1.0 N.D. -0.5 -0.8
ypd buoyancy 40 hrs Low Buoyancy -0.3 -0.9 N.D. -0.2 -0.6
growth on oleic acid YNB Oleic Acid -1.0 +0.6 N.D. -0.2 -1.2
growth on ricinoleic acid YNB Ricinoleic Acid -2.2 +0.1 N.D. +0.0 +0.3
facs on lipid accumulation Sorted High BODIPY Gate -1.2 -0.4 N.D. +0.7 -0.2
buoyancy on lipid accumulation 40 hrs High Buoyancy -0.3 -0.1 N.D. -0.4 -0.2
facs on lipid accumulation Sorted No BODIPY Gate -0.8 +0.2 N.D. -0.0 -0.2
buoyancy on lipid accumulation 40 hrs No Buoyancy Separation -0.5 +0.2 N.D. +0.1 -0.5
auxotrophy YNB Glucose 75mM Arginine -1.0 +0.1 N.D. -0.1 +0.3
buoyancy on lipid accumulation 40 hrs Median Buoyancy -0.7 +0.6 N.D. +0.2 -0.9
buoyancy on lipid accumulation 40 hrs Low Buoyancy -0.8 -0.2 N.D. +0.2 +0.2
growth on ricinoleic acid YNB Glucose -0.9 +0.6 N.D. -0.4 +0.1
growth on ypd YPD +0.0 +0.0 N.D. -0.2 -0.3
facs on lipid accumulation Sorted Low BODIPY Gate -0.1 +0.4 N.D. +0.5 -1.1
ypd buoyancy 40 hrs High Buoyancy +0.0 +0.0 N.D. +0.1 -0.5
growth on oleic acid YNB Glucose -0.5 +0.2 N.D. +0.1 -0.0
auxotrophy YNB Glucose 75mM Methionine -0.7 -0.1 N.D. +0.4 +0.2
ypd buoyancy 40 hrs No Buoyancy Separation +0.3 -0.1 N.D. -0.5 +0.1
auxotrophy Dropout Complete -0.8 +0.4 N.D. +0.1 +0.3
auxotrophy YNB Glucose -0.6 +0.2 N.D. -0.0 +0.5
ypd buoyancy 40 hrs Median Buoyancy +0.5 +0.1 N.D. +0.2 -0.0
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