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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
12140 and 12141 are separated by 157 nucleotides
12141 and 12142 are separated by 1622 nucleotides
12142 and 12143 are separated by 663 nucleotides
12143 and 12144 are separated by 292 nucleotides
mRNA_3772: 12140 - K17662 CBP3, UQCC cytochrome b pre-mRNA-processing protein 3, at 546,453 to 547,644
12140
mRNA_3773: 12141 - BLAST transmembrane protein, putative [Rhizoctonia solani A..., at 547,802 to 549,606
12141
mRNA_3774: 12142 - K01764 E4.4.1.17 cytochrome c heme-lyase, at 551,229 to 552,274
12142
mRNA_3775: 12143 - KOG2913 Predicted membrane protein, at 552,938 to 553,662
12143
mRNA_3776: 12144 - HMMPfam-FHA domain-PF00498,HMMPfam-Ring finger domain-PF13639,ProSiteProfiles-Forkhead-associated (FHA) domain profile.-PS50006,ProSiteProfiles-Zinc finger RING-type profile.-PS50089,SMART-Ring finger-SM00184,SMART-Forkhead associated domain-SM00240,SUPERFAMILY--SSF49879,SUPERFAMILY--SSF57850, at 553,955 to 556,574
12144
Group
Condition
mRNA
_3772
mRNA
_3773
mRNA
_3774
mRNA
_3775
mRNA
_3776
12140
12141
12142
12143
12144
growth on ricinoleic acid
YNB Methylricinoleic Acid
-2.4
+1.0
N.D.
-0.5
-0.8
ypd buoyancy
40 hrs Low Buoyancy
-0.3
-0.9
N.D.
-0.2
-0.6
growth on oleic acid
YNB Oleic Acid
-1.0
+0.6
N.D.
-0.2
-1.2
growth on ricinoleic acid
YNB Ricinoleic Acid
-2.2
+0.1
N.D.
+0.0
+0.3
facs on lipid accumulation
Sorted High BODIPY Gate
-1.2
-0.4
N.D.
+0.7
-0.2
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.3
-0.1
N.D.
-0.4
-0.2
facs on lipid accumulation
Sorted No BODIPY Gate
-0.8
+0.2
N.D.
-0.0
-0.2
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.5
+0.2
N.D.
+0.1
-0.5
auxotrophy
YNB Glucose 75mM Arginine
-1.0
+0.1
N.D.
-0.1
+0.3
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.7
+0.6
N.D.
+0.2
-0.9
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.8
-0.2
N.D.
+0.2
+0.2
growth on ricinoleic acid
YNB Glucose
-0.9
+0.6
N.D.
-0.4
+0.1
growth on ypd
YPD
+0.0
+0.0
N.D.
-0.2
-0.3
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.1
+0.4
N.D.
+0.5
-1.1
ypd buoyancy
40 hrs High Buoyancy
+0.0
+0.0
N.D.
+0.1
-0.5
growth on oleic acid
YNB Glucose
-0.5
+0.2
N.D.
+0.1
-0.0
auxotrophy
YNB Glucose 75mM Methionine
-0.7
-0.1
N.D.
+0.4
+0.2
ypd buoyancy
40 hrs No Buoyancy Separation
+0.3
-0.1
N.D.
-0.5
+0.1
auxotrophy
Dropout Complete
-0.8
+0.4
N.D.
+0.1
+0.3
auxotrophy
YNB Glucose
-0.6
+0.2
N.D.
-0.0
+0.5
ypd buoyancy
40 hrs Median Buoyancy
+0.5
+0.1
N.D.
+0.2
-0.0
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