Fitness for 5 genes in Rhodosporidium toruloides IFO0880

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Top 21 experiments (either direction), sorted by average fitness

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500 nt 12141 and 12142 are separated by 1622 nucleotides12142 and 12143 are separated by 663 nucleotides12143 and 12144 are separated by 292 nucleotides12144 and 12145 are separated by 605 nucleotides mRNA_3773: 12141 - BLAST transmembrane protein, putative [Rhizoctonia solani A..., at 547,802 to 549,606 12141 mRNA_3774: 12142 - K01764 E4.4.1.17 cytochrome c heme-lyase, at 551,229 to 552,274 12142 mRNA_3775: 12143 - KOG2913 Predicted membrane protein, at 552,938 to 553,662 12143 mRNA_3776: 12144 - HMMPfam-FHA domain-PF00498,HMMPfam-Ring finger domain-PF13639,ProSiteProfiles-Forkhead-associated (FHA) domain profile.-PS50006,ProSiteProfiles-Zinc finger RING-type profile.-PS50089,SMART-Ring finger-SM00184,SMART-Forkhead associated domain-SM00240,SUPERFAMILY--SSF49879,SUPERFAMILY--SSF57850, at 553,955 to 556,574 12144 mRNA_3777: 12145 - K20346 TMED4_9_11 p24 family protein alpha, at 557,180 to 558,034 12145
Group Condition mRNA_3773 mRNA_3774 mRNA_3775 mRNA_3776 mRNA_3777
12141 12142 12143 12144 12145
facs on lipid accumulation Sorted Low BODIPY Gate +0.4 N.D. +0.5 -1.1 -2.1
buoyancy on lipid accumulation 40 hrs Low Buoyancy -0.2 N.D. +0.2 +0.2 -1.7
facs on lipid accumulation Sorted No BODIPY Gate +0.2 N.D. -0.0 -0.2 -0.9
ypd buoyancy 40 hrs Low Buoyancy -0.9 N.D. -0.2 -0.6 +1.0
growth on ypd YPD +0.0 N.D. -0.2 -0.3 +0.0
buoyancy on lipid accumulation 40 hrs No Buoyancy Separation +0.2 N.D. +0.1 -0.5 +0.0
buoyancy on lipid accumulation 40 hrs Median Buoyancy +0.6 N.D. +0.2 -0.9 -0.0
ypd buoyancy 40 hrs No Buoyancy Separation -0.1 N.D. -0.5 +0.1 +0.5
buoyancy on lipid accumulation 40 hrs High Buoyancy -0.1 N.D. -0.4 -0.2 +0.7
ypd buoyancy 40 hrs High Buoyancy +0.0 N.D. +0.1 -0.5 +0.4
growth on oleic acid YNB Oleic Acid +0.6 N.D. -0.2 -1.2 +0.8
ypd buoyancy 40 hrs Median Buoyancy +0.1 N.D. +0.2 -0.0 -0.0
growth on ricinoleic acid YNB Methylricinoleic Acid +1.0 N.D. -0.5 -0.8 +0.7
growth on oleic acid YNB Glucose +0.2 N.D. +0.1 -0.0 +0.3
facs on lipid accumulation Sorted High BODIPY Gate -0.4 N.D. +0.7 -0.2 +0.6
auxotrophy YNB Glucose 75mM Arginine +0.1 N.D. -0.1 +0.3 +0.4
auxotrophy YNB Glucose 75mM Methionine -0.1 N.D. +0.4 +0.2 +0.3
growth on ricinoleic acid YNB Glucose +0.6 N.D. -0.4 +0.1 +0.8
growth on ricinoleic acid YNB Ricinoleic Acid +0.1 N.D. +0.0 +0.3 +0.6
auxotrophy YNB Glucose +0.2 N.D. -0.0 +0.5 +0.7
auxotrophy Dropout Complete +0.4 N.D. +0.1 +0.3 +1.0
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