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Protein
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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
12142 and 12143 are separated by 663 nucleotides
12143 and 12144 are separated by 292 nucleotides
12144 and 12145 are separated by 605 nucleotides
12145 and 12146 are separated by 450 nucleotides
mRNA_3774: 12142 - K01764 E4.4.1.17 cytochrome c heme-lyase, at 551,229 to 552,274
12142
mRNA_3775: 12143 - KOG2913 Predicted membrane protein, at 552,938 to 553,662
12143
mRNA_3776: 12144 - HMMPfam-FHA domain-PF00498,HMMPfam-Ring finger domain-PF13639,ProSiteProfiles-Forkhead-associated (FHA) domain profile.-PS50006,ProSiteProfiles-Zinc finger RING-type profile.-PS50089,SMART-Ring finger-SM00184,SMART-Forkhead associated domain-SM00240,SUPERFAMILY--SSF49879,SUPERFAMILY--SSF57850, at 553,955 to 556,574
12144
mRNA_3777: 12145 - K20346 TMED4_9_11 p24 family protein alpha, at 557,180 to 558,034
12145
mRNA_3778: 12146 - HMMPfam-Endonuclease V-PF04493, at 558,485 to 559,797
12146
Group
Condition
mRNA
_3774
mRNA
_3775
mRNA
_3776
mRNA
_3777
mRNA
_3778
12142
12143
12144
12145
12146
facs on lipid accumulation
Sorted Low BODIPY Gate
N.D.
+0.5
-1.1
-2.1
-0.7
facs on lipid accumulation
Sorted No BODIPY Gate
N.D.
-0.0
-0.2
-0.9
-0.2
growth on ricinoleic acid
YNB Methylricinoleic Acid
N.D.
-0.5
-0.8
+0.7
-0.6
buoyancy on lipid accumulation
40 hrs Low Buoyancy
N.D.
+0.2
+0.2
-1.7
+0.2
growth on ypd
YPD
N.D.
-0.2
-0.3
+0.0
-0.3
growth on oleic acid
YNB Oleic Acid
N.D.
-0.2
-1.2
+0.8
+0.1
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
N.D.
+0.1
-0.5
+0.0
+0.1
ypd buoyancy
40 hrs Low Buoyancy
N.D.
-0.2
-0.6
+1.0
-0.4
ypd buoyancy
40 hrs Median Buoyancy
N.D.
+0.2
-0.0
-0.0
-0.3
buoyancy on lipid accumulation
40 hrs Median Buoyancy
N.D.
+0.2
-0.9
-0.0
+0.6
ypd buoyancy
40 hrs High Buoyancy
N.D.
+0.1
-0.5
+0.4
-0.1
growth on ricinoleic acid
YNB Glucose
N.D.
-0.4
+0.1
+0.8
-0.3
ypd buoyancy
40 hrs No Buoyancy Separation
N.D.
-0.5
+0.1
+0.5
+0.1
growth on ricinoleic acid
YNB Ricinoleic Acid
N.D.
+0.0
+0.3
+0.6
-0.5
auxotrophy
YNB Glucose 75mM Arginine
N.D.
-0.1
+0.3
+0.4
-0.1
buoyancy on lipid accumulation
40 hrs High Buoyancy
N.D.
-0.4
-0.2
+0.7
+0.4
growth on oleic acid
YNB Glucose
N.D.
+0.1
-0.0
+0.3
+0.2
auxotrophy
YNB Glucose 75mM Methionine
N.D.
+0.4
+0.2
+0.3
-0.1
facs on lipid accumulation
Sorted High BODIPY Gate
N.D.
+0.7
-0.2
+0.6
-0.1
auxotrophy
YNB Glucose
N.D.
-0.0
+0.5
+0.7
-0.0
auxotrophy
Dropout Complete
N.D.
+0.1
+0.3
+1.0
-0.1
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