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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
12144 and 12145 are separated by 605 nucleotides
12145 and 12146 are separated by 450 nucleotides
12146 and 12147 are separated by 774 nucleotides
12147 and 12148 are separated by 246 nucleotides
mRNA_3776: 12144 - HMMPfam-FHA domain-PF00498,HMMPfam-Ring finger domain-PF13639,ProSiteProfiles-Forkhead-associated (FHA) domain profile.-PS50006,ProSiteProfiles-Zinc finger RING-type profile.-PS50089,SMART-Ring finger-SM00184,SMART-Forkhead associated domain-SM00240,SUPERFAMILY--SSF49879,SUPERFAMILY--SSF57850, at 553,955 to 556,574
12144
mRNA_3777: 12145 - K20346 TMED4_9_11 p24 family protein alpha, at 557,180 to 558,034
12145
mRNA_3778: 12146 - HMMPfam-Endonuclease V-PF04493, at 558,485 to 559,797
12146
mRNA_3779: 12147 - HMMPfam-Spc19-PF08287, at 560,572 to 561,347
12147
mRNA_3780: 12148 - KOG1426 FOG RCC1 domain, at 561,594 to 563,970
12148
Group
Condition
mRNA
_3776
mRNA
_3777
mRNA
_3778
mRNA
_3779
mRNA
_3780
12144
12145
12146
12147
12148
facs on lipid accumulation
Sorted Low BODIPY Gate
-1.1
-2.1
-0.7
N.D.
-0.3
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.2
-1.7
+0.2
N.D.
-0.1
facs on lipid accumulation
Sorted No BODIPY Gate
-0.2
-0.9
-0.2
N.D.
-0.2
growth on ypd
YPD
-0.3
+0.0
-0.3
N.D.
-0.0
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.5
+0.0
+0.1
N.D.
-0.0
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.8
+0.7
-0.6
N.D.
+0.3
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.9
-0.0
+0.6
N.D.
+0.0
ypd buoyancy
40 hrs Median Buoyancy
-0.0
-0.0
-0.3
N.D.
+0.1
ypd buoyancy
40 hrs High Buoyancy
-0.5
+0.4
-0.1
N.D.
-0.0
growth on oleic acid
YNB Oleic Acid
-1.2
+0.8
+0.1
N.D.
+0.1
ypd buoyancy
40 hrs No Buoyancy Separation
+0.1
+0.5
+0.1
N.D.
-0.8
ypd buoyancy
40 hrs Low Buoyancy
-0.6
+1.0
-0.4
N.D.
+0.1
facs on lipid accumulation
Sorted High BODIPY Gate
-0.2
+0.6
-0.1
N.D.
-0.1
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.3
+0.6
-0.5
N.D.
-0.1
growth on oleic acid
YNB Glucose
-0.0
+0.3
+0.2
N.D.
+0.1
auxotrophy
YNB Glucose 75mM Methionine
+0.2
+0.3
-0.1
N.D.
+0.3
auxotrophy
YNB Glucose 75mM Arginine
+0.3
+0.4
-0.1
N.D.
+0.1
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.2
+0.7
+0.4
N.D.
-0.1
growth on ricinoleic acid
YNB Glucose
+0.1
+0.8
-0.3
N.D.
+0.3
auxotrophy
Dropout Complete
+0.3
+1.0
-0.1
N.D.
+0.0
auxotrophy
YNB Glucose
+0.5
+0.7
-0.0
N.D.
+0.1
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