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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
12146 and 12147 are separated by 774 nucleotides
12147 and 12148 are separated by 246 nucleotides
12148 and 12149 are separated by 1587 nucleotides
12149 and 12150 are separated by 353 nucleotides
mRNA_3778: 12146 - HMMPfam-Endonuclease V-PF04493, at 558,485 to 559,797
12146
mRNA_3779: 12147 - HMMPfam-Spc19-PF08287, at 560,572 to 561,347
12147
mRNA_3780: 12148 - KOG1426 FOG RCC1 domain, at 561,594 to 563,970
12148
mRNA_3781: 12149 - K12821 PRPF40, PRP40 pre-mRNA-processing factor 40, at 565,558 to 568,249
12149
mRNA_3782: 12150 - K04354 PPP2R2 serine/threonine-protein phosphatase 2A regulatory subunit B, at 568,603 to 571,218
12150
Group
Condition
mRNA
_3778
mRNA
_3779
mRNA
_3780
mRNA
_3781
mRNA
_3782
12146
12147
12148
12149
12150
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.7
N.D.
-0.3
-0.0
N.D.
facs on lipid accumulation
Sorted No BODIPY Gate
-0.2
N.D.
-0.2
-0.4
N.D.
ypd buoyancy
40 hrs No Buoyancy Separation
+0.1
N.D.
-0.8
-0.0
N.D.
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.5
N.D.
-0.1
+0.0
N.D.
facs on lipid accumulation
Sorted High BODIPY Gate
-0.1
N.D.
-0.1
-0.2
N.D.
growth on ypd
YPD
-0.3
N.D.
-0.0
+0.0
N.D.
ypd buoyancy
40 hrs Low Buoyancy
-0.4
N.D.
+0.1
+0.1
N.D.
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.6
N.D.
+0.3
+0.1
N.D.
ypd buoyancy
40 hrs Median Buoyancy
-0.3
N.D.
+0.1
+0.0
N.D.
growth on oleic acid
YNB Oleic Acid
+0.1
N.D.
+0.1
-0.3
N.D.
ypd buoyancy
40 hrs High Buoyancy
-0.1
N.D.
-0.0
+0.0
N.D.
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.1
N.D.
-0.0
+0.0
N.D.
growth on ricinoleic acid
YNB Glucose
-0.3
N.D.
+0.3
+0.3
N.D.
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.2
N.D.
-0.1
+0.3
N.D.
growth on oleic acid
YNB Glucose
+0.2
N.D.
+0.1
+0.1
N.D.
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.4
N.D.
-0.1
+0.2
N.D.
auxotrophy
YNB Glucose
-0.0
N.D.
+0.1
+0.5
N.D.
auxotrophy
Dropout Complete
-0.1
N.D.
+0.0
+0.7
N.D.
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.6
N.D.
+0.0
+0.1
N.D.
auxotrophy
YNB Glucose 75mM Arginine
-0.1
N.D.
+0.1
+0.7
N.D.
auxotrophy
YNB Glucose 75mM Methionine
-0.1
N.D.
+0.3
+0.9
N.D.
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