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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
12151 and 12152 are separated by 510 nucleotides
12152 and 12153 are separated by 357 nucleotides
12153 and 12154 are separated by 515 nucleotides
12154 and 12155 are separated by 977 nucleotides
mRNA_3783: 12151 - KOG1502 Flavonol reductase/cinnamoyl-CoA reductase, at 572,145 to 573,439
12151
mRNA_3784: 12152 - KOG1188 WD40 repeat protein, at 573,950 to 575,324
12152
mRNA_3785: 12153 - K15178 RTF1 RNA polymerase-associated protein RTF1, at 575,682 to 577,961
12153
mRNA_3786: 12154 - K00006 GPD1 glycerol-3-phosphate dehydrogenase (NAD+), at 578,477 to 580,207
12154
mRNA_3787: 12155 - K01626 E2.5.1.54, aroF, aroG, aroH 3-deoxy-7-phosphoheptulonate synthase, at 581,185 to 583,154
12155
Group
Condition
mRNA
_3783
mRNA
_3784
mRNA
_3785
mRNA
_3786
mRNA
_3787
12151
12152
12153
12154
12155
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.1
N.D.
-1.2
-2.9
-0.0
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.2
N.D.
-0.2
-4.2
+0.3
facs on lipid accumulation
Sorted High BODIPY Gate
-0.0
N.D.
-0.5
-2.6
+0.3
facs on lipid accumulation
Sorted No BODIPY Gate
+0.1
N.D.
-1.0
-1.7
-0.1
ypd buoyancy
40 hrs No Buoyancy Separation
+0.7
N.D.
-0.5
-1.3
-0.7
growth on ricinoleic acid
YNB Glucose
-0.2
N.D.
-0.7
-0.3
-0.0
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.1
N.D.
-2.3
+1.4
-0.2
growth on ypd
YPD
+0.2
N.D.
-0.7
-0.1
-0.3
growth on oleic acid
YNB Oleic Acid
+0.0
N.D.
+0.5
-1.4
+0.6
ypd buoyancy
40 hrs Low Buoyancy
+0.1
N.D.
+0.6
-1.0
+0.2
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.4
N.D.
+0.3
-0.3
+0.3
ypd buoyancy
40 hrs High Buoyancy
+0.4
N.D.
-0.1
-0.4
+0.1
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.2
N.D.
+0.2
-0.4
+0.5
auxotrophy
YNB Glucose 75mM Arginine
+0.5
N.D.
-0.1
+0.3
-0.5
auxotrophy
YNB Glucose
+0.5
N.D.
-0.1
+0.5
-0.3
ypd buoyancy
40 hrs Median Buoyancy
+0.4
N.D.
+0.0
-0.1
+0.3
auxotrophy
YNB Glucose 75mM Methionine
+0.5
N.D.
+0.4
-0.0
-0.1
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.1
N.D.
+0.7
+0.2
-0.0
growth on oleic acid
YNB Glucose
+0.2
N.D.
+0.6
-0.4
+0.5
auxotrophy
Dropout Complete
+0.8
N.D.
+0.3
+0.2
-0.1
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.4
N.D.
-0.5
+1.8
+0.2
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