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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
12154 and 12155 are separated by 977 nucleotides
12155 and 12156 are separated by 56 nucleotides
12156 and 12157 are separated by 290 nucleotides
12157 and 12158 are separated by 537 nucleotides
mRNA_3786: 12154 - K00006 GPD1 glycerol-3-phosphate dehydrogenase (NAD+), at 578,477 to 580,207
12154
mRNA_3787: 12155 - K01626 E2.5.1.54, aroF, aroG, aroH 3-deoxy-7-phosphoheptulonate synthase, at 581,185 to 583,154
12155
mRNA_3788: 12156 - Hypothetical Protein, at 583,211 to 584,056
12156
mRNA_3789: 12157 - K09584 PDIA6, TXNDC7 protein disulfide-isomerase A6, at 584,347 to 585,517
12157
mRNA_3790: 12158 - K07151 STT3 dolichyl-diphosphooligosaccharide--protein glycosyltransferase, at 586,055 to 588,728
12158
Group
Condition
mRNA
_3786
mRNA
_3787
mRNA
_3788
mRNA
_3789
mRNA
_3790
12154
12155
12156
12157
12158
ypd buoyancy
40 hrs No Buoyancy Separation
-1.3
-0.7
-0.8
-0.1
N.D.
growth on ricinoleic acid
YNB Methylricinoleic Acid
-4.2
+0.3
+0.0
+1.0
N.D.
facs on lipid accumulation
Sorted High BODIPY Gate
-2.6
+0.3
-0.2
-0.4
N.D.
growth on ricinoleic acid
YNB Ricinoleic Acid
-2.9
-0.0
-0.6
+1.5
N.D.
facs on lipid accumulation
Sorted No BODIPY Gate
-1.7
-0.1
+0.1
+0.1
N.D.
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.3
+0.3
-1.0
-0.2
N.D.
ypd buoyancy
40 hrs Low Buoyancy
-1.0
+0.2
-0.1
+0.2
N.D.
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.4
+0.5
-0.5
-0.2
N.D.
ypd buoyancy
40 hrs High Buoyancy
-0.4
+0.1
-0.2
-0.0
N.D.
growth on ricinoleic acid
YNB Glucose
-0.3
-0.0
-0.4
+0.4
N.D.
growth on oleic acid
YNB Oleic Acid
-1.4
+0.6
+0.2
+0.3
N.D.
facs on lipid accumulation
Sorted Low BODIPY Gate
+1.4
-0.2
-1.4
+0.0
N.D.
auxotrophy
YNB Glucose
+0.5
-0.3
-0.2
+0.2
N.D.
auxotrophy
YNB Glucose 75mM Methionine
-0.0
-0.1
-0.1
+0.3
N.D.
auxotrophy
YNB Glucose 75mM Arginine
+0.3
-0.5
+0.2
+0.2
N.D.
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.2
-0.0
-0.1
+0.1
N.D.
auxotrophy
Dropout Complete
+0.2
-0.1
+0.2
+0.2
N.D.
growth on oleic acid
YNB Glucose
-0.4
+0.5
+0.2
+0.2
N.D.
ypd buoyancy
40 hrs Median Buoyancy
-0.1
+0.3
+0.2
+0.5
N.D.
growth on ypd
YPD
-0.1
-0.3
+1.0
+0.3
N.D.
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+1.8
+0.2
-0.4
+0.1
N.D.
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