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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
12156 and 12157 are separated by 290 nucleotides
12157 and 12158 are separated by 537 nucleotides
12158 and 12159 are separated by 128 nucleotides
12159 and 12160 are separated by 414 nucleotides
mRNA_3788: 12156 - Hypothetical Protein, at 583,211 to 584,056
12156
mRNA_3789: 12157 - K09584 PDIA6, TXNDC7 protein disulfide-isomerase A6, at 584,347 to 585,517
12157
mRNA_3790: 12158 - K07151 STT3 dolichyl-diphosphooligosaccharide--protein glycosyltransferase, at 586,055 to 588,728
12158
mRNA_3791: 12159 - K00287 folA dihydrofolate reductase, at 588,857 to 589,593
12159
mRNA_3792: 12160 - K12811 DDX46, PRP5 ATP-dependent RNA helicase DDX46/PRP5, at 590,008 to 594,469
12160
Group
Condition
mRNA
_3788
mRNA
_3789
mRNA
_3790
mRNA
_3791
mRNA
_3792
12156
12157
12158
12159
12160
facs on lipid accumulation
Sorted Low BODIPY Gate
-1.4
+0.0
N.D.
N.D.
+0.5
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-1.0
-0.2
N.D.
N.D.
+0.4
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.5
-0.2
N.D.
N.D.
+0.2
ypd buoyancy
40 hrs No Buoyancy Separation
-0.8
-0.1
N.D.
N.D.
+0.6
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.0
+1.0
N.D.
N.D.
-1.1
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.4
+0.1
N.D.
N.D.
+0.3
auxotrophy
YNB Glucose
-0.2
+0.2
N.D.
N.D.
+0.1
facs on lipid accumulation
Sorted High BODIPY Gate
-0.2
-0.4
N.D.
N.D.
+0.7
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.6
+1.5
N.D.
N.D.
-0.8
ypd buoyancy
40 hrs High Buoyancy
-0.2
-0.0
N.D.
N.D.
+0.5
ypd buoyancy
40 hrs Low Buoyancy
-0.1
+0.2
N.D.
N.D.
+0.1
auxotrophy
Dropout Complete
+0.2
+0.2
N.D.
N.D.
+0.1
growth on ricinoleic acid
YNB Glucose
-0.4
+0.4
N.D.
N.D.
+0.6
growth on oleic acid
YNB Oleic Acid
+0.2
+0.3
N.D.
N.D.
+0.2
auxotrophy
YNB Glucose 75mM Methionine
-0.1
+0.3
N.D.
N.D.
+0.4
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.1
+0.1
N.D.
N.D.
+0.6
facs on lipid accumulation
Sorted No BODIPY Gate
+0.1
+0.1
N.D.
N.D.
+0.6
auxotrophy
YNB Glucose 75mM Arginine
+0.2
+0.2
N.D.
N.D.
+0.5
ypd buoyancy
40 hrs Median Buoyancy
+0.2
+0.5
N.D.
N.D.
+0.2
growth on oleic acid
YNB Glucose
+0.2
+0.2
N.D.
N.D.
+0.6
growth on ypd
YPD
+1.0
+0.3
N.D.
N.D.
+0.6
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