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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
12159 and 12160 are separated by 414 nucleotides
12160 and 12161 are separated by 343 nucleotides
12161 and 12162 are separated by 178 nucleotides
12162 and 12163 are separated by 229 nucleotides
mRNA_3791: 12159 - K00287 folA dihydrofolate reductase, at 588,857 to 589,593
12159
mRNA_3792: 12160 - K12811 DDX46, PRP5 ATP-dependent RNA helicase DDX46/PRP5, at 590,008 to 594,469
12160
mRNA_3793: 12161 - K15528 FAAH fatty acid amide hydrolase, at 594,813 to 596,952
12161
mRNA_3794: 12162 - KOG4618 Uncharacterized conserved protein, at 597,131 to 597,697
12162
mRNA_3795: 12163 - HMMPfam-MYND finger-PF01753,SUPERFAMILY--SSF144232, at 597,927 to 600,358
12163
Group
Condition
mRNA
_3791
mRNA
_3792
mRNA
_3793
mRNA
_3794
mRNA
_3795
12159
12160
12161
12162
12163
growth on ricinoleic acid
YNB Methylricinoleic Acid
N.D.
-1.1
-0.4
+0.3
+0.0
ypd buoyancy
40 hrs No Buoyancy Separation
N.D.
+0.6
-0.1
-0.3
-1.1
growth on oleic acid
YNB Oleic Acid
N.D.
+0.2
-0.2
+0.1
-0.8
growth on ricinoleic acid
YNB Ricinoleic Acid
N.D.
-0.8
+0.2
+0.1
-0.1
auxotrophy
YNB Glucose 75mM Methionine
N.D.
+0.4
-0.3
-0.5
+0.1
auxotrophy
YNB Glucose
N.D.
+0.1
-0.3
+0.1
+0.1
buoyancy on lipid accumulation
40 hrs Low Buoyancy
N.D.
+0.3
+0.2
-0.1
-0.3
facs on lipid accumulation
Sorted Low BODIPY Gate
N.D.
+0.5
-0.1
+0.2
-0.5
buoyancy on lipid accumulation
40 hrs Median Buoyancy
N.D.
+0.2
+0.2
-0.2
+0.0
ypd buoyancy
40 hrs Low Buoyancy
N.D.
+0.1
-0.2
+0.1
+0.3
buoyancy on lipid accumulation
40 hrs High Buoyancy
N.D.
+0.6
+0.1
+0.0
-0.3
auxotrophy
Dropout Complete
N.D.
+0.1
+0.0
+0.3
+0.1
growth on oleic acid
YNB Glucose
N.D.
+0.6
-0.0
+0.2
-0.3
auxotrophy
YNB Glucose 75mM Arginine
N.D.
+0.5
-0.1
-0.3
+0.3
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
N.D.
+0.4
+0.1
-0.3
+0.3
facs on lipid accumulation
Sorted High BODIPY Gate
N.D.
+0.7
-0.6
+0.5
-0.1
growth on ricinoleic acid
YNB Glucose
N.D.
+0.6
-0.4
+0.2
+0.2
growth on ypd
YPD
N.D.
+0.6
+0.3
-0.2
-0.1
ypd buoyancy
40 hrs Median Buoyancy
N.D.
+0.2
-0.0
+0.3
+0.4
facs on lipid accumulation
Sorted No BODIPY Gate
N.D.
+0.6
-0.5
+0.9
-0.0
ypd buoyancy
40 hrs High Buoyancy
N.D.
+0.5
-0.0
+0.6
+0.3
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