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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
12163 and 12164 are separated by 124 nucleotides
12164 and 12165 are separated by 180 nucleotides
12165 and 12166 are separated by 163 nucleotides
12166 and 12167 are separated by 644 nucleotides
mRNA_3795: 12163 - HMMPfam-MYND finger-PF01753,SUPERFAMILY--SSF144232, at 597,927 to 600,358
12163
mRNA_3796: 12164 - Hypothetical Protein, at 600,483 to 601,004
12164
mRNA_3797: 12165 - Hypothetical Protein, at 601,185 to 602,135
12165
mRNA_3798: 12166 - K14771 NOC4, UTP19 U3 small nucleolar RNA-associated protein 19, at 602,299 to 604,532
12166
mRNA_3799: 12167 - KOG1611 Predicted short chain-type dehydrogenase, at 605,177 to 606,005
12167
Group
Condition
mRNA
_3795
mRNA
_3796
mRNA
_3797
mRNA
_3798
mRNA
_3799
12163
12164
12165
12166
12167
ypd buoyancy
40 hrs No Buoyancy Separation
-1.1
+0.7
-0.0
N.D.
-1.8
growth on oleic acid
YNB Oleic Acid
-0.8
-0.8
-0.4
N.D.
+0.1
auxotrophy
YNB Glucose
+0.1
-0.5
-0.5
N.D.
-0.5
auxotrophy
Dropout Complete
+0.1
-0.6
-0.2
N.D.
-0.3
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.1
-0.9
+0.1
N.D.
-0.2
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.0
-0.8
-0.0
N.D.
-0.0
auxotrophy
YNB Glucose 75mM Arginine
+0.3
-0.2
-0.4
N.D.
-0.5
auxotrophy
YNB Glucose 75mM Methionine
+0.1
-0.3
-0.2
N.D.
-0.0
facs on lipid accumulation
Sorted High BODIPY Gate
-0.1
-0.8
+0.0
N.D.
+0.4
growth on ricinoleic acid
YNB Glucose
+0.2
-0.7
-0.4
N.D.
+0.5
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.3
+0.2
-0.4
N.D.
+0.1
growth on oleic acid
YNB Glucose
-0.3
-0.1
-0.2
N.D.
+0.3
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.3
-0.0
-0.1
N.D.
+0.1
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.5
+0.4
-0.0
N.D.
-0.2
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.3
-0.0
-0.3
N.D.
+0.3
ypd buoyancy
40 hrs Low Buoyancy
+0.3
+0.2
+0.0
N.D.
-0.2
facs on lipid accumulation
Sorted No BODIPY Gate
-0.0
-0.6
+0.7
N.D.
+0.5
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.0
+0.5
+0.2
N.D.
+0.1
ypd buoyancy
40 hrs Median Buoyancy
+0.4
+0.5
-0.0
N.D.
+0.0
growth on ypd
YPD
-0.1
+0.4
+0.3
N.D.
+0.2
ypd buoyancy
40 hrs High Buoyancy
+0.3
+1.0
+0.0
N.D.
+0.1
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