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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
12165 and 12166 are separated by 163 nucleotides
12166 and 12167 are separated by 644 nucleotides
12167 and 12168 are separated by 203 nucleotides
12168 and 12169 are separated by 132 nucleotides
mRNA_3797: 12165 - Hypothetical Protein, at 601,185 to 602,135
12165
mRNA_3798: 12166 - K14771 NOC4, UTP19 U3 small nucleolar RNA-associated protein 19, at 602,299 to 604,532
12166
mRNA_3799: 12167 - KOG1611 Predicted short chain-type dehydrogenase, at 605,177 to 606,005
12167
mRNA_3800: 12168 - K14715 SLC39A9, ZIP9 solute carrier family 39 (zinc transporter), member 9, at 606,209 to 607,581
12168
mRNA_3801: 12169 - K12591 RRP6, EXOSC10 exosome complex exonuclease RRP6, at 607,714 to 610,860
12169
Group
Condition
mRNA
_3797
mRNA
_3798
mRNA
_3799
mRNA
_3800
mRNA
_3801
12165
12166
12167
12168
12169
ypd buoyancy
40 hrs No Buoyancy Separation
-0.0
N.D.
-1.8
+0.3
+0.2
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.3
N.D.
+0.3
-0.5
-0.6
facs on lipid accumulation
Sorted High BODIPY Gate
+0.0
N.D.
+0.4
-0.7
-0.9
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.1
N.D.
+0.1
-0.4
-0.6
auxotrophy
YNB Glucose 75mM Arginine
-0.4
N.D.
-0.5
+0.0
+0.2
auxotrophy
YNB Glucose
-0.5
N.D.
-0.5
+0.3
+0.1
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.4
N.D.
+0.1
+0.4
-0.6
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.0
N.D.
-0.0
-0.4
+0.2
growth on ricinoleic acid
YNB Glucose
-0.4
N.D.
+0.5
-0.2
-0.0
auxotrophy
Dropout Complete
-0.2
N.D.
-0.3
+0.3
+0.2
growth on oleic acid
YNB Oleic Acid
-0.4
N.D.
+0.1
+0.4
-0.1
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.0
N.D.
-0.2
-0.1
+0.3
ypd buoyancy
40 hrs Low Buoyancy
+0.0
N.D.
-0.2
+0.3
+0.0
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.2
N.D.
+0.1
+0.2
-0.2
growth on ypd
YPD
+0.3
N.D.
+0.2
+0.3
-0.4
auxotrophy
YNB Glucose 75mM Methionine
-0.2
N.D.
-0.0
+0.2
+0.3
growth on oleic acid
YNB Glucose
-0.2
N.D.
+0.3
+0.2
+0.1
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.1
N.D.
-0.2
-0.1
+0.6
facs on lipid accumulation
Sorted No BODIPY Gate
+0.7
N.D.
+0.5
-0.3
-0.2
ypd buoyancy
40 hrs High Buoyancy
+0.0
N.D.
+0.1
+0.5
+0.3
ypd buoyancy
40 hrs Median Buoyancy
-0.0
N.D.
+0.0
+0.7
+0.5
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