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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
12167 and 12168 are separated by 203 nucleotides
12168 and 12169 are separated by 132 nucleotides
12169 and 12170 are separated by 186 nucleotides
12170 and 12171 are separated by 965 nucleotides
mRNA_3799: 12167 - KOG1611 Predicted short chain-type dehydrogenase, at 605,177 to 606,005
12167
mRNA_3800: 12168 - K14715 SLC39A9, ZIP9 solute carrier family 39 (zinc transporter), member 9, at 606,209 to 607,581
12168
mRNA_3801: 12169 - K12591 RRP6, EXOSC10 exosome complex exonuclease RRP6, at 607,714 to 610,860
12169
mRNA_3802: 12170 - K01939 purA, ADSS adenylosuccinate synthase, at 611,047 to 612,951
12170
mRNA_3803: 12171 - Hypothetical Protein, at 613,917 to 616,021
12171
Group
Condition
mRNA
_3799
mRNA
_3800
mRNA
_3801
mRNA
_3802
mRNA
_3803
12167
12168
12169
12170
12171
ypd buoyancy
40 hrs No Buoyancy Separation
-1.8
+0.3
+0.2
N.D.
-0.3
facs on lipid accumulation
Sorted High BODIPY Gate
+0.4
-0.7
-0.9
N.D.
-0.0
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.3
-0.5
-0.6
N.D.
-0.1
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.1
-0.4
-0.6
N.D.
-0.1
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.2
-0.1
+0.3
N.D.
-0.5
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.1
+0.4
-0.6
N.D.
-0.1
facs on lipid accumulation
Sorted No BODIPY Gate
+0.5
-0.3
-0.2
N.D.
-0.1
auxotrophy
YNB Glucose 75mM Arginine
-0.5
+0.0
+0.2
N.D.
+0.1
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.1
+0.2
-0.2
N.D.
-0.2
auxotrophy
Dropout Complete
-0.3
+0.3
+0.2
N.D.
-0.1
auxotrophy
YNB Glucose
-0.5
+0.3
+0.1
N.D.
+0.1
ypd buoyancy
40 hrs Low Buoyancy
-0.2
+0.3
+0.0
N.D.
+0.1
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.0
-0.4
+0.2
N.D.
+0.6
growth on oleic acid
YNB Oleic Acid
+0.1
+0.4
-0.1
N.D.
+0.2
growth on oleic acid
YNB Glucose
+0.3
+0.2
+0.1
N.D.
-0.0
growth on ricinoleic acid
YNB Glucose
+0.5
-0.2
-0.0
N.D.
+0.4
growth on ypd
YPD
+0.2
+0.3
-0.4
N.D.
+0.7
auxotrophy
YNB Glucose 75mM Methionine
-0.0
+0.2
+0.3
N.D.
+0.3
ypd buoyancy
40 hrs High Buoyancy
+0.1
+0.5
+0.3
N.D.
+0.1
ypd buoyancy
40 hrs Median Buoyancy
+0.0
+0.7
+0.5
N.D.
-0.2
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.2
-0.1
+0.6
N.D.
+0.8
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