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Protein
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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
12177 and 12178 are separated by 403 nucleotides
12178 and 12179 are separated by 359 nucleotides
12179 and 12180 are separated by 249 nucleotides
12180 and 12181 are separated by 290 nucleotides
mRNA_3809: 12177 - Hypothetical Protein, at 631,164 to 632,051
12177
mRNA_3810: 12178 - K12869 CRN, CRNKL1, CLF1, SYF3 crooked neck, at 632,455 to 635,215
12178
mRNA_3811: 12179 - Hypothetical Protein, at 635,575 to 638,591
12179
mRNA_3812: 12180 - HMMPfam-MYND finger-PF01753,SUPERFAMILY--SSF144232, at 638,841 to 639,831
12180
mRNA_3813: 12181 - BLAST zinc finger, C3HC4 type (RING finger) protein [Rhizoc..., at 640,122 to 642,119
12181
Group
Condition
mRNA
_3809
mRNA
_3810
mRNA
_3811
mRNA
_3812
mRNA
_3813
12177
12178
12179
12180
12181
growth on ricinoleic acid
YNB Ricinoleic Acid
N.D.
N.D.
-0.3
-0.0
-0.6
ypd buoyancy
40 hrs Low Buoyancy
N.D.
N.D.
-0.3
-0.0
-0.5
facs on lipid accumulation
Sorted High BODIPY Gate
N.D.
N.D.
-0.1
-0.3
-0.2
buoyancy on lipid accumulation
40 hrs Median Buoyancy
N.D.
N.D.
-0.9
-0.0
+0.5
ypd buoyancy
40 hrs No Buoyancy Separation
N.D.
N.D.
-0.4
-0.1
+0.2
facs on lipid accumulation
Sorted No BODIPY Gate
N.D.
N.D.
+0.1
-0.5
+0.1
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
N.D.
N.D.
-0.8
-0.2
+0.8
facs on lipid accumulation
Sorted Low BODIPY Gate
N.D.
N.D.
+0.0
-0.4
+0.2
growth on ricinoleic acid
YNB Methylricinoleic Acid
N.D.
N.D.
+0.2
-0.3
-0.0
buoyancy on lipid accumulation
40 hrs High Buoyancy
N.D.
N.D.
-0.7
-0.1
+0.5
growth on ricinoleic acid
YNB Glucose
N.D.
N.D.
+0.5
-0.6
+0.2
growth on oleic acid
YNB Glucose
N.D.
N.D.
+0.4
+0.3
-0.7
ypd buoyancy
40 hrs High Buoyancy
N.D.
N.D.
-0.1
+0.2
+0.0
auxotrophy
Dropout Complete
N.D.
N.D.
+0.3
-0.3
+0.1
ypd buoyancy
40 hrs Median Buoyancy
N.D.
N.D.
+0.1
+0.1
-0.0
growth on oleic acid
YNB Oleic Acid
N.D.
N.D.
+0.4
+0.2
-0.2
auxotrophy
YNB Glucose 75mM Arginine
N.D.
N.D.
+0.4
-0.1
+0.3
auxotrophy
YNB Glucose
N.D.
N.D.
+0.4
-0.2
+0.4
auxotrophy
YNB Glucose 75mM Methionine
N.D.
N.D.
+0.3
+0.2
+0.5
buoyancy on lipid accumulation
40 hrs Low Buoyancy
N.D.
N.D.
+0.2
+0.2
+0.8
growth on ypd
YPD
N.D.
N.D.
+0.2
+1.2
+0.3
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