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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
12178 and 12179 are separated by 359 nucleotides
12179 and 12180 are separated by 249 nucleotides
12180 and 12181 are separated by 290 nucleotides
12181 and 12182 are separated by 20 nucleotides
mRNA_3810: 12178 - K12869 CRN, CRNKL1, CLF1, SYF3 crooked neck, at 632,455 to 635,215
12178
mRNA_3811: 12179 - Hypothetical Protein, at 635,575 to 638,591
12179
mRNA_3812: 12180 - HMMPfam-MYND finger-PF01753,SUPERFAMILY--SSF144232, at 638,841 to 639,831
12180
mRNA_3813: 12181 - BLAST zinc finger, C3HC4 type (RING finger) protein [Rhizoc..., at 640,122 to 642,119
12181
mRNA_3814: 12182 - PRINTS-Proline rich extensin signature-PR01217, at 642,140 to 643,933
12182
Group
Condition
mRNA
_3810
mRNA
_3811
mRNA
_3812
mRNA
_3813
mRNA
_3814
12178
12179
12180
12181
12182
growth on ricinoleic acid
YNB Ricinoleic Acid
N.D.
-0.3
-0.0
-0.6
-0.5
ypd buoyancy
40 hrs Low Buoyancy
N.D.
-0.3
-0.0
-0.5
-0.1
facs on lipid accumulation
Sorted High BODIPY Gate
N.D.
-0.1
-0.3
-0.2
-0.2
growth on ricinoleic acid
YNB Methylricinoleic Acid
N.D.
+0.2
-0.3
-0.0
-0.5
facs on lipid accumulation
Sorted Low BODIPY Gate
N.D.
+0.0
-0.4
+0.2
-0.3
facs on lipid accumulation
Sorted No BODIPY Gate
N.D.
+0.1
-0.5
+0.1
-0.2
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
N.D.
-0.8
-0.2
+0.8
-0.0
buoyancy on lipid accumulation
40 hrs Median Buoyancy
N.D.
-0.9
-0.0
+0.5
+0.2
growth on oleic acid
YNB Glucose
N.D.
+0.4
+0.3
-0.7
-0.2
ypd buoyancy
40 hrs High Buoyancy
N.D.
-0.1
+0.2
+0.0
-0.1
growth on oleic acid
YNB Oleic Acid
N.D.
+0.4
+0.2
-0.2
-0.2
auxotrophy
Dropout Complete
N.D.
+0.3
-0.3
+0.1
-0.0
ypd buoyancy
40 hrs Median Buoyancy
N.D.
+0.1
+0.1
-0.0
-0.0
buoyancy on lipid accumulation
40 hrs High Buoyancy
N.D.
-0.7
-0.1
+0.5
+0.4
growth on ricinoleic acid
YNB Glucose
N.D.
+0.5
-0.6
+0.2
+0.2
auxotrophy
YNB Glucose 75mM Arginine
N.D.
+0.4
-0.1
+0.3
-0.2
auxotrophy
YNB Glucose
N.D.
+0.4
-0.2
+0.4
-0.1
ypd buoyancy
40 hrs No Buoyancy Separation
N.D.
-0.4
-0.1
+0.2
+0.8
auxotrophy
YNB Glucose 75mM Methionine
N.D.
+0.3
+0.2
+0.5
-0.2
growth on ypd
YPD
N.D.
+0.2
+1.2
+0.3
-0.3
buoyancy on lipid accumulation
40 hrs Low Buoyancy
N.D.
+0.2
+0.2
+0.8
+0.3
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