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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
12179 and 12180 are separated by 249 nucleotides
12180 and 12181 are separated by 290 nucleotides
12181 and 12182 are separated by 20 nucleotides
12182 and 12183 are separated by 420 nucleotides
mRNA_3811: 12179 - Hypothetical Protein, at 635,575 to 638,591
12179
mRNA_3812: 12180 - HMMPfam-MYND finger-PF01753,SUPERFAMILY--SSF144232, at 638,841 to 639,831
12180
mRNA_3813: 12181 - BLAST zinc finger, C3HC4 type (RING finger) protein [Rhizoc..., at 640,122 to 642,119
12181
mRNA_3814: 12182 - PRINTS-Proline rich extensin signature-PR01217, at 642,140 to 643,933
12182
mRNA_3815: 12183 - K06631 PLK1 polo-like kinase 1, at 644,354 to 647,784
12183
Group
Condition
mRNA
_3811
mRNA
_3812
mRNA
_3813
mRNA
_3814
mRNA
_3815
12179
12180
12181
12182
12183
ypd buoyancy
40 hrs No Buoyancy Separation
-0.4
-0.1
+0.2
+0.8
-4.6
facs on lipid accumulation
Sorted No BODIPY Gate
+0.1
-0.5
+0.1
-0.2
-3.2
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.0
-0.4
+0.2
-0.3
-2.6
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.2
-0.3
-0.0
-0.5
-2.0
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.3
-0.0
-0.6
-0.5
-1.0
facs on lipid accumulation
Sorted High BODIPY Gate
-0.1
-0.3
-0.2
-0.2
-1.3
ypd buoyancy
40 hrs Low Buoyancy
-0.3
-0.0
-0.5
-0.1
-0.9
growth on oleic acid
YNB Glucose
+0.4
+0.3
-0.7
-0.2
-0.7
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.8
-0.2
+0.8
-0.0
-0.4
growth on ricinoleic acid
YNB Glucose
+0.5
-0.6
+0.2
+0.2
-0.9
growth on oleic acid
YNB Oleic Acid
+0.4
+0.2
-0.2
-0.2
-0.5
auxotrophy
Dropout Complete
+0.3
-0.3
+0.1
-0.0
-0.5
auxotrophy
YNB Glucose 75mM Arginine
+0.4
-0.1
+0.3
-0.2
-0.7
ypd buoyancy
40 hrs Median Buoyancy
+0.1
+0.1
-0.0
-0.0
-0.4
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.9
-0.0
+0.5
+0.2
-0.0
auxotrophy
YNB Glucose
+0.4
-0.2
+0.4
-0.1
-0.3
auxotrophy
YNB Glucose 75mM Methionine
+0.3
+0.2
+0.5
-0.2
-0.4
ypd buoyancy
40 hrs High Buoyancy
-0.1
+0.2
+0.0
-0.1
+0.5
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.2
+0.2
+0.8
+0.3
-0.4
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.7
-0.1
+0.5
+0.4
+1.2
growth on ypd
YPD
+0.2
+1.2
+0.3
-0.3
+1.8
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