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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
12181 and 12182 are separated by 20 nucleotides
12182 and 12183 are separated by 420 nucleotides
12183 and 12184 are separated by 290 nucleotides
12184 and 12185 are separated by 303 nucleotides
mRNA_3813: 12181 - BLAST zinc finger, C3HC4 type (RING finger) protein [Rhizoc..., at 640,122 to 642,119
12181
mRNA_3814: 12182 - PRINTS-Proline rich extensin signature-PR01217, at 642,140 to 643,933
12182
mRNA_3815: 12183 - K06631 PLK1 polo-like kinase 1, at 644,354 to 647,784
12183
mRNA_3816: 12184 - KOG3613 Dopey and related predicted leucine zipper transcription factors, at 648,075 to 655,221
12184
mRNA_3817: 12185 - SUPERFAMILY--SSF52047, at 655,525 to 657,844
12185
Group
Condition
mRNA
_3813
mRNA
_3814
mRNA
_3815
mRNA
_3816
mRNA
_3817
12181
12182
12183
12184
12185
ypd buoyancy
40 hrs No Buoyancy Separation
+0.2
+0.8
-4.6
-0.3
+0.0
facs on lipid accumulation
Sorted No BODIPY Gate
+0.1
-0.2
-3.2
+0.2
-0.1
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.2
-0.3
-2.6
-0.1
-0.0
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.6
-0.5
-1.0
+0.3
-0.3
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.0
-0.5
-2.0
+1.0
-0.2
facs on lipid accumulation
Sorted High BODIPY Gate
-0.2
-0.2
-1.3
+0.4
-0.3
growth on oleic acid
YNB Glucose
-0.7
-0.2
-0.7
+0.5
-0.2
ypd buoyancy
40 hrs Low Buoyancy
-0.5
-0.1
-0.9
+0.6
-0.1
ypd buoyancy
40 hrs Median Buoyancy
-0.0
-0.0
-0.4
+0.1
+0.0
growth on ricinoleic acid
YNB Glucose
+0.2
+0.2
-0.9
+0.7
-0.3
auxotrophy
YNB Glucose 75mM Arginine
+0.3
-0.2
-0.7
+0.6
+0.0
growth on oleic acid
YNB Oleic Acid
-0.2
-0.2
-0.5
+1.0
+0.0
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.8
-0.0
-0.4
+0.2
-0.0
auxotrophy
Dropout Complete
+0.1
-0.0
-0.5
+0.8
+0.3
auxotrophy
YNB Glucose
+0.4
-0.1
-0.3
+0.7
-0.1
ypd buoyancy
40 hrs High Buoyancy
+0.0
-0.1
+0.5
-0.0
+0.3
auxotrophy
YNB Glucose 75mM Methionine
+0.5
-0.2
-0.4
+0.7
+0.1
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.8
+0.3
-0.4
+0.3
-0.1
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.5
+0.2
-0.0
+0.3
-0.1
growth on ypd
YPD
+0.3
-0.3
+1.8
+0.1
+0.1
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.5
+0.4
+1.2
+0.3
+0.1
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