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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
12183 and 12184 are separated by 290 nucleotides
12184 and 12185 are separated by 303 nucleotides
12185 and 12186 are separated by 87 nucleotides
12186 and 12187 are separated by 263 nucleotides
mRNA_3815: 12183 - K06631 PLK1 polo-like kinase 1, at 644,354 to 647,784
12183
mRNA_3816: 12184 - KOG3613 Dopey and related predicted leucine zipper transcription factors, at 648,075 to 655,221
12184
mRNA_3817: 12185 - SUPERFAMILY--SSF52047, at 655,525 to 657,844
12185
mRNA_3818: 12186 - K09650 PARL, PSARL, PCP1 rhomboid-like protein, at 657,932 to 659,126
12186
mRNA_3819: 12187 - HMMPfam-MYND finger-PF01753,SUPERFAMILY--SSF144232, at 659,390 to 660,393
12187
Group
Condition
mRNA
_3815
mRNA
_3816
mRNA
_3817
mRNA
_3818
mRNA
_3819
12183
12184
12185
12186
12187
ypd buoyancy
40 hrs No Buoyancy Separation
-4.6
-0.3
+0.0
+0.6
-2.0
facs on lipid accumulation
Sorted Low BODIPY Gate
-2.6
-0.1
-0.0
-0.3
-0.3
facs on lipid accumulation
Sorted No BODIPY Gate
-3.2
+0.2
-0.1
+0.4
+0.2
growth on ricinoleic acid
YNB Methylricinoleic Acid
-2.0
+1.0
-0.2
-0.5
+0.0
growth on ricinoleic acid
YNB Ricinoleic Acid
-1.0
+0.3
-0.3
-0.4
+0.1
facs on lipid accumulation
Sorted High BODIPY Gate
-1.3
+0.4
-0.3
+0.0
+0.3
growth on ricinoleic acid
YNB Glucose
-0.9
+0.7
-0.3
-0.1
-0.2
growth on oleic acid
YNB Glucose
-0.7
+0.5
-0.2
-0.3
+0.2
ypd buoyancy
40 hrs Low Buoyancy
-0.9
+0.6
-0.1
-0.2
+0.1
ypd buoyancy
40 hrs Median Buoyancy
-0.4
+0.1
+0.0
+0.1
+0.5
auxotrophy
YNB Glucose 75mM Arginine
-0.7
+0.6
+0.0
-0.0
+0.5
auxotrophy
YNB Glucose
-0.3
+0.7
-0.1
-0.1
+0.7
auxotrophy
YNB Glucose 75mM Methionine
-0.4
+0.7
+0.1
-0.2
+0.7
growth on oleic acid
YNB Oleic Acid
-0.5
+1.0
+0.0
-0.1
+0.6
ypd buoyancy
40 hrs High Buoyancy
+0.5
-0.0
+0.3
+0.2
+0.2
growth on ypd
YPD
+1.8
+0.1
+0.1
-0.7
+0.4
auxotrophy
Dropout Complete
-0.5
+0.8
+0.3
-0.0
+1.5
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.0
+0.3
-0.1
+0.6
+1.2
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.4
+0.2
-0.0
+0.5
+2.4
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.4
+0.3
-0.1
+1.1
+1.8
buoyancy on lipid accumulation
40 hrs High Buoyancy
+1.2
+0.3
+0.1
+0.4
+2.1
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