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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
12186 and 12187 are separated by 263 nucleotides
12187 and 12188 are separated by 442 nucleotides
12188 and 12189 are separated by 236 nucleotides
12189 and 12190 are separated by 122 nucleotides
mRNA_3818: 12186 - K09650 PARL, PSARL, PCP1 rhomboid-like protein, at 657,932 to 659,126
12186
mRNA_3819: 12187 - HMMPfam-MYND finger-PF01753,SUPERFAMILY--SSF144232, at 659,390 to 660,393
12187
mRNA_3820: 12188 - K20046 SLA1 actin cytoskeleton-regulatory complex protein SLA1, at 660,836 to 665,185
12188
mRNA_3821: 12189 - K19001 HELLS, DDM1 ATP-dependent DNA helicase, at 665,422 to 669,105
12189
mRNA_3822: 12190 - HMMPfam-Protein of unknown function (DUF2781)-PF10914,PIRSF--PIRSF031032, at 669,228 to 670,038
12190
Group
Condition
mRNA
_3818
mRNA
_3819
mRNA
_3820
mRNA
_3821
mRNA
_3822
12186
12187
12188
12189
12190
facs on lipid accumulation
Sorted High BODIPY Gate
+0.0
+0.3
N.D.
-0.3
-1.7
ypd buoyancy
40 hrs No Buoyancy Separation
+0.6
-2.0
N.D.
+0.4
-0.6
growth on oleic acid
YNB Glucose
-0.3
+0.2
N.D.
-0.3
-0.9
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.5
+0.0
N.D.
-0.2
-0.4
growth on ypd
YPD
-0.7
+0.4
N.D.
+0.0
-0.4
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.3
-0.3
N.D.
-0.4
+0.3
growth on ricinoleic acid
YNB Glucose
-0.1
-0.2
N.D.
-0.2
-0.0
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.4
+0.1
N.D.
-0.5
+0.6
auxotrophy
YNB Glucose 75mM Arginine
-0.0
+0.5
N.D.
+0.1
-0.8
growth on oleic acid
YNB Oleic Acid
-0.1
+0.6
N.D.
-0.3
-0.4
auxotrophy
YNB Glucose 75mM Methionine
-0.2
+0.7
N.D.
+0.2
-0.8
ypd buoyancy
40 hrs Low Buoyancy
-0.2
+0.1
N.D.
-0.0
+0.4
auxotrophy
YNB Glucose
-0.1
+0.7
N.D.
+0.0
-0.1
ypd buoyancy
40 hrs High Buoyancy
+0.2
+0.2
N.D.
-0.2
+0.6
facs on lipid accumulation
Sorted No BODIPY Gate
+0.4
+0.2
N.D.
-0.0
+0.5
ypd buoyancy
40 hrs Median Buoyancy
+0.1
+0.5
N.D.
+0.2
+0.1
auxotrophy
Dropout Complete
-0.0
+1.5
N.D.
-0.1
-0.3
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.5
+2.4
N.D.
-0.3
-0.1
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.6
+1.2
N.D.
-0.2
+1.2
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+1.1
+1.8
N.D.
-0.2
+0.2
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.4
+2.1
N.D.
+0.1
+0.5
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