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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
12193 and 12194 are separated by 598 nucleotides
12194 and 12195 are separated by 1351 nucleotides
12195 and 12196 are separated by 640 nucleotides
12196 and 12197 are separated by 729 nucleotides
mRNA_3825: 12193 - K02941 RP-LP0, RPLP0 large subunit ribosomal protein LP0, at 671,427 to 672,513
12193
mRNA_3826: 12194 - Hypothetical Protein, at 673,112 to 675,577
12194
mRNA_3827: 12195 - Hypothetical Protein, at 676,929 to 682,172
12195
mRNA_3828: 12196 - Hypothetical Protein, at 682,813 to 683,280
12196
mRNA_3829: 12197 - KOG0519 Sensory transduction histidine kinase, at 684,010 to 687,695
12197
Group
Condition
mRNA
_3825
mRNA
_3826
mRNA
_3827
mRNA
_3828
mRNA
_3829
12193
12194
12195
12196
12197
growth on ricinoleic acid
YNB Methylricinoleic Acid
N.D.
-0.9
+0.1
-0.1
-0.2
auxotrophy
YNB Glucose 75mM Methionine
N.D.
-0.5
+0.2
+0.1
-0.5
auxotrophy
YNB Glucose
N.D.
-0.5
+0.2
+0.2
-0.5
growth on ricinoleic acid
YNB Ricinoleic Acid
N.D.
-0.4
+0.2
-0.1
-0.3
growth on oleic acid
YNB Glucose
N.D.
-0.5
+0.1
+0.1
-0.3
facs on lipid accumulation
Sorted Low BODIPY Gate
N.D.
+0.3
+0.4
-0.1
-1.1
growth on ricinoleic acid
YNB Glucose
N.D.
-0.4
+0.3
+0.1
-0.3
auxotrophy
YNB Glucose 75mM Arginine
N.D.
-0.2
+0.1
+0.1
-0.4
growth on oleic acid
YNB Oleic Acid
N.D.
-0.8
+0.4
+0.1
+0.0
auxotrophy
Dropout Complete
N.D.
-0.2
+0.2
+0.1
-0.4
facs on lipid accumulation
Sorted High BODIPY Gate
N.D.
-0.3
-0.5
+0.3
+0.3
facs on lipid accumulation
Sorted No BODIPY Gate
N.D.
+0.1
+0.1
-0.0
-0.3
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
N.D.
+0.2
+0.0
+0.1
-0.3
ypd buoyancy
40 hrs Low Buoyancy
N.D.
-0.2
+0.3
-0.1
+0.2
ypd buoyancy
40 hrs Median Buoyancy
N.D.
+0.3
+0.1
+0.0
-0.0
buoyancy on lipid accumulation
40 hrs Low Buoyancy
N.D.
+0.2
+0.2
+0.1
-0.0
ypd buoyancy
40 hrs High Buoyancy
N.D.
+0.3
+0.1
+0.0
+0.0
buoyancy on lipid accumulation
40 hrs High Buoyancy
N.D.
+0.1
+0.1
+0.2
+0.1
ypd buoyancy
40 hrs No Buoyancy Separation
N.D.
-0.0
+0.3
-0.0
+0.5
buoyancy on lipid accumulation
40 hrs Median Buoyancy
N.D.
+0.5
-0.0
+0.1
+0.1
growth on ypd
YPD
N.D.
+0.3
+0.4
-0.1
+0.3
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