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Protein
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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
12201 and 12202 are separated by 922 nucleotides
12202 and 12203 are separated by 235 nucleotides
12203 and 12204 are separated by 1060 nucleotides
12204 and 12205 are separated by 2604 nucleotides
mRNA_3833: 12201 - K15196 BRF1, GTF3B transcription factor IIIB 90 kDa subunit, at 692,168 to 694,484
12201
mRNA_3834: 12202 - Hypothetical Protein, at 695,407 to 697,402
12202
mRNA_3835: 12203 - K09260 MEF2A MADS-box transcription enhancer factor 2A, at 697,638 to 699,790
12203
mRNA_3836: 12204 - Hypothetical Protein, at 700,851 to 701,786
12204
mRNA_3837: 12205 - K01044 CES1 carboxylesterase 1, at 704,391 to 706,480
12205
Group
Condition
mRNA
_3833
mRNA
_3834
mRNA
_3835
mRNA
_3836
mRNA
_3837
12201
12202
12203
12204
12205
growth on ricinoleic acid
YNB Glucose
-0.3
+0.2
-0.4
-0.2
-0.1
growth on ypd
YPD
-0.5
+0.0
+0.4
-0.8
+0.2
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.2
+0.2
-0.2
-0.2
-0.2
growth on ricinoleic acid
YNB Ricinoleic Acid
-1.0
+0.8
-0.3
+0.2
-0.1
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.2
-0.3
+0.1
-0.1
+0.2
ypd buoyancy
40 hrs Low Buoyancy
+0.6
-0.8
-0.1
+0.1
-0.0
ypd buoyancy
40 hrs High Buoyancy
+0.6
-0.3
-0.1
-0.2
+0.0
ypd buoyancy
40 hrs Median Buoyancy
+0.2
-0.3
+0.1
+0.2
-0.1
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.1
+0.1
+0.3
+0.0
-0.3
growth on oleic acid
YNB Glucose
+0.5
-0.2
-0.3
-0.2
+0.4
growth on oleic acid
YNB Oleic Acid
+0.5
-0.4
+0.2
-0.2
+0.3
facs on lipid accumulation
Sorted High BODIPY Gate
+0.1
-0.3
+0.7
-0.1
+0.1
auxotrophy
YNB Glucose 75mM Methionine
+0.1
+0.9
-0.3
-0.5
+0.3
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.3
+0.8
-0.2
-0.3
+0.1
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.4
+0.4
+0.2
+0.1
+0.1
auxotrophy
YNB Glucose 75mM Arginine
+0.2
+1.1
-0.1
-0.3
+0.3
auxotrophy
YNB Glucose
+0.5
+1.1
-0.4
-0.3
+0.3
auxotrophy
Dropout Complete
+0.5
+0.9
+0.0
-0.4
+0.3
ypd buoyancy
40 hrs No Buoyancy Separation
+0.0
+0.9
-0.1
+1.0
-0.4
facs on lipid accumulation
Sorted No BODIPY Gate
+1.0
+0.5
+0.5
-0.2
+0.3
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+1.4
+0.2
+0.4
-0.1
+0.3
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