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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
12203 and 12204 are separated by 1060 nucleotides
12204 and 12205 are separated by 2604 nucleotides
12205 and 12206 are separated by 345 nucleotides
12206 and 12207 are separated by 164 nucleotides
mRNA_3835: 12203 - K09260 MEF2A MADS-box transcription enhancer factor 2A, at 697,638 to 699,790
12203
mRNA_3836: 12204 - Hypothetical Protein, at 700,851 to 701,786
12204
mRNA_3837: 12205 - K01044 CES1 carboxylesterase 1, at 704,391 to 706,480
12205
mRNA_3838: 12206 - HMMPfam-START domain-PF01852,ProSiteProfiles-START domain profile.-PS50848,SUPERFAMILY--SSF55961, at 706,826 to 713,191
12206
mRNA_3839: 12207 - BLAST E3 ubiquitin-protein ligase RNF213 [Mus musculus] [Rh..., at 713,356 to 714,077
12207
Group
Condition
mRNA
_3835
mRNA
_3836
mRNA
_3837
mRNA
_3838
mRNA
_3839
12203
12204
12205
12206
12207
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.2
-0.3
+0.1
-1.3
-1.5
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.3
+0.0
-0.3
-0.6
-1.3
growth on ricinoleic acid
YNB Glucose
-0.4
-0.2
-0.1
-0.4
-0.4
auxotrophy
YNB Glucose 75mM Methionine
-0.3
-0.5
+0.3
+0.0
-0.8
auxotrophy
YNB Glucose 75mM Arginine
-0.1
-0.3
+0.3
-0.6
-0.5
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.3
+0.2
-0.1
-0.3
-0.5
ypd buoyancy
40 hrs No Buoyancy Separation
-0.1
+1.0
-0.4
+0.6
-2.0
auxotrophy
YNB Glucose
-0.4
-0.3
+0.3
-0.3
-0.1
facs on lipid accumulation
Sorted No BODIPY Gate
+0.5
-0.2
+0.3
-0.7
-0.6
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.2
-0.2
-0.2
-0.2
+0.1
ypd buoyancy
40 hrs High Buoyancy
-0.1
-0.2
+0.0
+0.2
-0.4
growth on oleic acid
YNB Glucose
-0.3
-0.2
+0.4
-0.4
+0.1
ypd buoyancy
40 hrs Median Buoyancy
+0.1
+0.2
-0.1
+0.3
-0.7
growth on ypd
YPD
+0.4
-0.8
+0.2
-0.2
+0.3
auxotrophy
Dropout Complete
+0.0
-0.4
+0.3
-0.2
+0.2
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.1
-0.1
+0.2
+0.1
-0.3
facs on lipid accumulation
Sorted High BODIPY Gate
+0.7
-0.1
+0.1
-0.3
-0.1
ypd buoyancy
40 hrs Low Buoyancy
-0.1
+0.1
-0.0
+0.5
-0.1
growth on oleic acid
YNB Oleic Acid
+0.2
-0.2
+0.3
-0.3
+0.4
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.4
-0.1
+0.3
+0.5
-0.5
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.2
+0.1
+0.1
+0.3
+0.5
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