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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
12205 and 12206 are separated by 345 nucleotides
12206 and 12207 are separated by 164 nucleotides
12207 and 12208 are separated by 295 nucleotides
12208 and 12209 are separated by 262 nucleotides
mRNA_3837: 12205 - K01044 CES1 carboxylesterase 1, at 704,391 to 706,480
12205
mRNA_3838: 12206 - HMMPfam-START domain-PF01852,ProSiteProfiles-START domain profile.-PS50848,SUPERFAMILY--SSF55961, at 706,826 to 713,191
12206
mRNA_3839: 12207 - BLAST E3 ubiquitin-protein ligase RNF213 [Mus musculus] [Rh..., at 713,356 to 714,077
12207
mRNA_3840: 12208 - K18849 BMT2 25S rRNA (adenine2142-N1)-methyltransferase, at 714,373 to 715,825
12208
mRNA_3841: 12209 - K13431 SRPR signal recognition particle receptor subunit alpha, at 716,088 to 718,591
12209
Group
Condition
mRNA
_3837
mRNA
_3838
mRNA
_3839
mRNA
_3840
mRNA
_3841
12205
12206
12207
12208
12209
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.1
-1.3
-1.5
+0.2
-1.4
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.3
-0.6
-1.3
-0.0
-0.8
facs on lipid accumulation
Sorted No BODIPY Gate
+0.3
-0.7
-0.6
-0.1
-1.5
ypd buoyancy
40 hrs No Buoyancy Separation
-0.4
+0.6
-2.0
-0.6
+0.6
facs on lipid accumulation
Sorted High BODIPY Gate
+0.1
-0.3
-0.1
-0.0
-1.4
growth on ricinoleic acid
YNB Glucose
-0.1
-0.4
-0.4
+0.1
-0.5
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.2
+0.1
-0.3
-0.3
-1.0
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.1
-0.3
-0.5
-0.4
+0.2
auxotrophy
YNB Glucose 75mM Methionine
+0.3
+0.0
-0.8
-0.4
-0.2
auxotrophy
YNB Glucose 75mM Arginine
+0.3
-0.6
-0.5
+0.5
-0.8
growth on oleic acid
YNB Glucose
+0.4
-0.4
+0.1
-0.2
-0.6
ypd buoyancy
40 hrs High Buoyancy
+0.0
+0.2
-0.4
-0.1
-0.1
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.2
-0.2
+0.1
-0.2
+0.1
growth on oleic acid
YNB Oleic Acid
+0.3
-0.3
+0.4
-0.3
-0.5
auxotrophy
YNB Glucose
+0.3
-0.3
-0.1
+0.4
-0.6
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.3
+0.5
-0.5
-0.3
-0.3
auxotrophy
Dropout Complete
+0.3
-0.2
+0.2
+0.0
-0.5
ypd buoyancy
40 hrs Median Buoyancy
-0.1
+0.3
-0.7
+0.3
-0.0
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.1
+0.3
+0.5
-0.2
-0.9
ypd buoyancy
40 hrs Low Buoyancy
-0.0
+0.5
-0.1
+0.5
-0.2
growth on ypd
YPD
+0.2
-0.2
+0.3
+0.5
-0.0
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