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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
12206 and 12207 are separated by 164 nucleotides
12207 and 12208 are separated by 295 nucleotides
12208 and 12209 are separated by 262 nucleotides
12209 and 12210 are separated by 260 nucleotides
mRNA_3838: 12206 - HMMPfam-START domain-PF01852,ProSiteProfiles-START domain profile.-PS50848,SUPERFAMILY--SSF55961, at 706,826 to 713,191
12206
mRNA_3839: 12207 - BLAST E3 ubiquitin-protein ligase RNF213 [Mus musculus] [Rh..., at 713,356 to 714,077
12207
mRNA_3840: 12208 - K18849 BMT2 25S rRNA (adenine2142-N1)-methyltransferase, at 714,373 to 715,825
12208
mRNA_3841: 12209 - K13431 SRPR signal recognition particle receptor subunit alpha, at 716,088 to 718,591
12209
mRNA_3842: 12210 - K18179 COA6 cytochrome c oxidase assembly factor 6, at 718,852 to 719,357
12210
Group
Condition
mRNA
_3838
mRNA
_3839
mRNA
_3840
mRNA
_3841
mRNA
_3842
12206
12207
12208
12209
12210
facs on lipid accumulation
Sorted Low BODIPY Gate
-1.3
-1.5
+0.2
-1.4
-0.1
facs on lipid accumulation
Sorted No BODIPY Gate
-0.7
-0.6
-0.1
-1.5
-0.4
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.6
-1.3
-0.0
-0.8
+0.3
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.3
-0.5
-0.4
+0.2
-0.9
facs on lipid accumulation
Sorted High BODIPY Gate
-0.3
-0.1
-0.0
-1.4
+0.0
growth on ricinoleic acid
YNB Glucose
-0.4
-0.4
+0.1
-0.5
-0.4
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.1
-0.3
-0.3
-1.0
-0.1
growth on oleic acid
YNB Oleic Acid
-0.3
+0.4
-0.3
-0.5
-0.5
ypd buoyancy
40 hrs No Buoyancy Separation
+0.6
-2.0
-0.6
+0.6
+0.1
auxotrophy
YNB Glucose 75mM Methionine
+0.0
-0.8
-0.4
-0.2
+0.3
growth on oleic acid
YNB Glucose
-0.4
+0.1
-0.2
-0.6
+0.1
auxotrophy
YNB Glucose 75mM Arginine
-0.6
-0.5
+0.5
-0.8
+0.3
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.2
+0.1
-0.2
+0.1
-0.5
ypd buoyancy
40 hrs High Buoyancy
+0.2
-0.4
-0.1
-0.1
-0.2
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.5
-0.5
-0.3
-0.3
+0.0
auxotrophy
Dropout Complete
-0.2
+0.2
+0.0
-0.5
-0.1
auxotrophy
YNB Glucose
-0.3
-0.1
+0.4
-0.6
+0.1
ypd buoyancy
40 hrs Median Buoyancy
+0.3
-0.7
+0.3
-0.0
+0.1
growth on ypd
YPD
-0.2
+0.3
+0.5
-0.0
-0.5
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.3
+0.5
-0.2
-0.9
+0.4
ypd buoyancy
40 hrs Low Buoyancy
+0.5
-0.1
+0.5
-0.2
-0.2
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