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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
12207 and 12208 are separated by 295 nucleotides
12208 and 12209 are separated by 262 nucleotides
12209 and 12210 are separated by 260 nucleotides
12210 and 12211 are separated by 156 nucleotides
mRNA_3839: 12207 - BLAST E3 ubiquitin-protein ligase RNF213 [Mus musculus] [Rh..., at 713,356 to 714,077
12207
mRNA_3840: 12208 - K18849 BMT2 25S rRNA (adenine2142-N1)-methyltransferase, at 714,373 to 715,825
12208
mRNA_3841: 12209 - K13431 SRPR signal recognition particle receptor subunit alpha, at 716,088 to 718,591
12209
mRNA_3842: 12210 - K18179 COA6 cytochrome c oxidase assembly factor 6, at 718,852 to 719,357
12210
mRNA_3843: 12211 - HMMPfam-MYND finger-PF01753,SUPERFAMILY--SSF144232, at 719,514 to 723,213
12211
Group
Condition
mRNA
_3839
mRNA
_3840
mRNA
_3841
mRNA
_3842
mRNA
_3843
12207
12208
12209
12210
12211
facs on lipid accumulation
Sorted Low BODIPY Gate
-1.5
+0.2
-1.4
-0.1
+0.2
facs on lipid accumulation
Sorted No BODIPY Gate
-0.6
-0.1
-1.5
-0.4
+0.3
ypd buoyancy
40 hrs No Buoyancy Separation
-2.0
-0.6
+0.6
+0.1
-0.3
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.3
-0.3
-1.0
-0.1
-0.2
buoyancy on lipid accumulation
40 hrs High Buoyancy
-1.3
-0.0
-0.8
+0.3
-0.0
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.5
-0.4
+0.2
-0.9
+0.2
auxotrophy
YNB Glucose 75mM Methionine
-0.8
-0.4
-0.2
+0.3
-0.2
facs on lipid accumulation
Sorted High BODIPY Gate
-0.1
-0.0
-1.4
+0.0
+0.2
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.5
-0.3
-0.3
+0.0
-0.2
growth on ricinoleic acid
YNB Glucose
-0.4
+0.1
-0.5
-0.4
+0.0
growth on oleic acid
YNB Oleic Acid
+0.4
-0.3
-0.5
-0.5
-0.0
ypd buoyancy
40 hrs High Buoyancy
-0.4
-0.1
-0.1
-0.2
+0.0
growth on oleic acid
YNB Glucose
+0.1
-0.2
-0.6
+0.1
-0.1
auxotrophy
YNB Glucose 75mM Arginine
-0.5
+0.5
-0.8
+0.3
-0.2
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.1
-0.2
+0.1
-0.5
+0.1
auxotrophy
Dropout Complete
+0.2
+0.0
-0.5
-0.1
-0.1
auxotrophy
YNB Glucose
-0.1
+0.4
-0.6
+0.1
-0.2
ypd buoyancy
40 hrs Median Buoyancy
-0.7
+0.3
-0.0
+0.1
-0.0
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.5
-0.2
-0.9
+0.4
-0.0
ypd buoyancy
40 hrs Low Buoyancy
-0.1
+0.5
-0.2
-0.2
-0.0
growth on ypd
YPD
+0.3
+0.5
-0.0
-0.5
+0.3
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