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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
12209 and 12210 are separated by 260 nucleotides
12210 and 12211 are separated by 156 nucleotides
12211 and 12212 are separated by 115 nucleotides
12212 and 12213 are separated by 472 nucleotides
mRNA_3841: 12209 - K13431 SRPR signal recognition particle receptor subunit alpha, at 716,088 to 718,591
12209
mRNA_3842: 12210 - K18179 COA6 cytochrome c oxidase assembly factor 6, at 718,852 to 719,357
12210
mRNA_3843: 12211 - HMMPfam-MYND finger-PF01753,SUPERFAMILY--SSF144232, at 719,514 to 723,213
12211
mRNA_3844: 12212 - HMMPfam-Afadin- and alpha -actinin-Binding-PF11559, at 723,329 to 725,612
12212
mRNA_3845: 12213 - HMMPfam-Putative methyltransferase-PF10294,SUPERFAMILY--SSF53335, at 726,085 to 727,619
12213
Group
Condition
mRNA
_3841
mRNA
_3842
mRNA
_3843
mRNA
_3844
mRNA
_3845
12209
12210
12211
12212
12213
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-1.0
-0.1
-0.2
-0.2
-0.1
facs on lipid accumulation
Sorted No BODIPY Gate
-1.5
-0.4
+0.3
+0.3
+0.2
facs on lipid accumulation
Sorted High BODIPY Gate
-1.4
+0.0
+0.2
+0.4
-0.2
facs on lipid accumulation
Sorted Low BODIPY Gate
-1.4
-0.1
+0.2
+0.7
-0.3
ypd buoyancy
40 hrs High Buoyancy
-0.1
-0.2
+0.0
-0.3
-0.3
growth on ricinoleic acid
YNB Glucose
-0.5
-0.4
+0.0
+0.1
+0.0
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.9
+0.4
-0.0
-0.0
-0.2
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.8
+0.3
-0.0
-0.1
+0.0
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.3
+0.0
-0.2
-0.2
+0.2
ypd buoyancy
40 hrs Low Buoyancy
-0.2
-0.2
-0.0
-0.1
+0.0
growth on oleic acid
YNB Glucose
-0.6
+0.1
-0.1
+0.1
+0.2
growth on oleic acid
YNB Oleic Acid
-0.5
-0.5
-0.0
+0.4
+0.3
growth on ypd
YPD
-0.0
-0.5
+0.3
+0.3
-0.3
auxotrophy
YNB Glucose
-0.6
+0.1
-0.2
-0.1
+0.6
auxotrophy
Dropout Complete
-0.5
-0.1
-0.1
+0.1
+0.4
auxotrophy
YNB Glucose 75mM Arginine
-0.8
+0.3
-0.2
+0.1
+0.5
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.1
-0.5
+0.1
+0.5
-0.1
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.2
-0.9
+0.2
+0.4
+0.2
auxotrophy
YNB Glucose 75mM Methionine
-0.2
+0.3
-0.2
+0.2
+0.1
ypd buoyancy
40 hrs Median Buoyancy
-0.0
+0.1
-0.0
-0.1
+0.2
ypd buoyancy
40 hrs No Buoyancy Separation
+0.6
+0.1
-0.3
+0.6
+0.3
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