Fitness for 5 genes in Rhodosporidium toruloides IFO0880

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Top 21 experiments (either direction), sorted by average fitness

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500 nt 12210 and 12211 are separated by 156 nucleotides12211 and 12212 are separated by 115 nucleotides12212 and 12213 are separated by 472 nucleotides12213 and 12214 are separated by 988 nucleotides mRNA_3842: 12210 - K18179 COA6 cytochrome c oxidase assembly factor 6, at 718,852 to 719,357 12210 mRNA_3843: 12211 - HMMPfam-MYND finger-PF01753,SUPERFAMILY--SSF144232, at 719,514 to 723,213 12211 mRNA_3844: 12212 - HMMPfam-Afadin- and alpha -actinin-Binding-PF11559, at 723,329 to 725,612 12212 mRNA_3845: 12213 - HMMPfam-Putative methyltransferase-PF10294,SUPERFAMILY--SSF53335, at 726,085 to 727,619 12213 mRNA_3846: 12214 - HMMPfam-HORMA domain-PF02301,HMMPfam-Zinc-finger double-stranded RNA-binding-PF12171,ProSitePatterns-Zinc finger C2H2 type domain signature.-PS00028,ProSiteProfiles-Zinc finger C2H2 type domain profile.-PS50157,ProSiteProfiles-HORMA domain profile.-PS50815,SMART-zinc finger-SM00355,SUPERFAMILY--SSF56019,SUPERFAMILY--SSF57667, at 728,608 to 730,842 12214
Group Condition mRNA_3842 mRNA_3843 mRNA_3844 mRNA_3845 mRNA_3846
12210 12211 12212 12213 12214
buoyancy on lipid accumulation 40 hrs No Buoyancy Separation -0.1 -0.2 -0.2 -0.1 -0.4
ypd buoyancy 40 hrs High Buoyancy -0.2 +0.0 -0.3 -0.3 +0.0
ypd buoyancy 40 hrs Low Buoyancy -0.2 -0.0 -0.1 +0.0 -0.1
growth on ypd YPD -0.5 +0.3 +0.3 -0.3 -0.0
growth on ricinoleic acid YNB Glucose -0.4 +0.0 +0.1 +0.0 +0.1
growth on ricinoleic acid YNB Ricinoleic Acid -0.9 +0.2 +0.4 +0.2 -0.0
buoyancy on lipid accumulation 40 hrs Low Buoyancy +0.0 -0.2 -0.2 +0.2 +0.2
growth on ricinoleic acid YNB Methylricinoleic Acid -0.5 +0.1 +0.5 -0.1 +0.1
buoyancy on lipid accumulation 40 hrs High Buoyancy +0.3 -0.0 -0.1 +0.0 -0.1
ypd buoyancy 40 hrs Median Buoyancy +0.1 -0.0 -0.1 +0.2 -0.1
buoyancy on lipid accumulation 40 hrs Median Buoyancy +0.4 -0.0 -0.0 -0.2 -0.1
growth on oleic acid YNB Oleic Acid -0.5 -0.0 +0.4 +0.3 +0.0
auxotrophy Dropout Complete -0.1 -0.1 +0.1 +0.4 -0.1
facs on lipid accumulation Sorted High BODIPY Gate +0.0 +0.2 +0.4 -0.2 -0.1
facs on lipid accumulation Sorted No BODIPY Gate -0.4 +0.3 +0.3 +0.2 -0.0
growth on oleic acid YNB Glucose +0.1 -0.1 +0.1 +0.2 +0.2
auxotrophy YNB Glucose 75mM Methionine +0.3 -0.2 +0.2 +0.1 +0.1
facs on lipid accumulation Sorted Low BODIPY Gate -0.1 +0.2 +0.7 -0.3 +0.0
auxotrophy YNB Glucose +0.1 -0.2 -0.1 +0.6 +0.1
auxotrophy YNB Glucose 75mM Arginine +0.3 -0.2 +0.1 +0.5 -0.1
ypd buoyancy 40 hrs No Buoyancy Separation +0.1 -0.3 +0.6 +0.3 +0.0
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