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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
12210 and 12211 are separated by 156 nucleotides
12211 and 12212 are separated by 115 nucleotides
12212 and 12213 are separated by 472 nucleotides
12213 and 12214 are separated by 988 nucleotides
mRNA_3842: 12210 - K18179 COA6 cytochrome c oxidase assembly factor 6, at 718,852 to 719,357
12210
mRNA_3843: 12211 - HMMPfam-MYND finger-PF01753,SUPERFAMILY--SSF144232, at 719,514 to 723,213
12211
mRNA_3844: 12212 - HMMPfam-Afadin- and alpha -actinin-Binding-PF11559, at 723,329 to 725,612
12212
mRNA_3845: 12213 - HMMPfam-Putative methyltransferase-PF10294,SUPERFAMILY--SSF53335, at 726,085 to 727,619
12213
mRNA_3846: 12214 - HMMPfam-HORMA domain-PF02301,HMMPfam-Zinc-finger double-stranded RNA-binding-PF12171,ProSitePatterns-Zinc finger C2H2 type domain signature.-PS00028,ProSiteProfiles-Zinc finger C2H2 type domain profile.-PS50157,ProSiteProfiles-HORMA domain profile.-PS50815,SMART-zinc finger-SM00355,SUPERFAMILY--SSF56019,SUPERFAMILY--SSF57667, at 728,608 to 730,842
12214
Group
Condition
mRNA
_3842
mRNA
_3843
mRNA
_3844
mRNA
_3845
mRNA
_3846
12210
12211
12212
12213
12214
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.1
-0.2
-0.2
-0.1
-0.4
ypd buoyancy
40 hrs High Buoyancy
-0.2
+0.0
-0.3
-0.3
+0.0
ypd buoyancy
40 hrs Low Buoyancy
-0.2
-0.0
-0.1
+0.0
-0.1
growth on ypd
YPD
-0.5
+0.3
+0.3
-0.3
-0.0
growth on ricinoleic acid
YNB Glucose
-0.4
+0.0
+0.1
+0.0
+0.1
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.9
+0.2
+0.4
+0.2
-0.0
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.0
-0.2
-0.2
+0.2
+0.2
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.5
+0.1
+0.5
-0.1
+0.1
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.3
-0.0
-0.1
+0.0
-0.1
ypd buoyancy
40 hrs Median Buoyancy
+0.1
-0.0
-0.1
+0.2
-0.1
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.4
-0.0
-0.0
-0.2
-0.1
growth on oleic acid
YNB Oleic Acid
-0.5
-0.0
+0.4
+0.3
+0.0
auxotrophy
Dropout Complete
-0.1
-0.1
+0.1
+0.4
-0.1
facs on lipid accumulation
Sorted High BODIPY Gate
+0.0
+0.2
+0.4
-0.2
-0.1
facs on lipid accumulation
Sorted No BODIPY Gate
-0.4
+0.3
+0.3
+0.2
-0.0
growth on oleic acid
YNB Glucose
+0.1
-0.1
+0.1
+0.2
+0.2
auxotrophy
YNB Glucose 75mM Methionine
+0.3
-0.2
+0.2
+0.1
+0.1
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.1
+0.2
+0.7
-0.3
+0.0
auxotrophy
YNB Glucose
+0.1
-0.2
-0.1
+0.6
+0.1
auxotrophy
YNB Glucose 75mM Arginine
+0.3
-0.2
+0.1
+0.5
-0.1
ypd buoyancy
40 hrs No Buoyancy Separation
+0.1
-0.3
+0.6
+0.3
+0.0
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