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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
12211 and 12212 are separated by 115 nucleotides
12212 and 12213 are separated by 472 nucleotides
12213 and 12214 are separated by 988 nucleotides
12214 and 12215 are separated by 1804 nucleotides
mRNA_3843: 12211 - HMMPfam-MYND finger-PF01753,SUPERFAMILY--SSF144232, at 719,514 to 723,213
12211
mRNA_3844: 12212 - HMMPfam-Afadin- and alpha -actinin-Binding-PF11559, at 723,329 to 725,612
12212
mRNA_3845: 12213 - HMMPfam-Putative methyltransferase-PF10294,SUPERFAMILY--SSF53335, at 726,085 to 727,619
12213
mRNA_3846: 12214 - HMMPfam-HORMA domain-PF02301,HMMPfam-Zinc-finger double-stranded RNA-binding-PF12171,ProSitePatterns-Zinc finger C2H2 type domain signature.-PS00028,ProSiteProfiles-Zinc finger C2H2 type domain profile.-PS50157,ProSiteProfiles-HORMA domain profile.-PS50815,SMART-zinc finger-SM00355,SUPERFAMILY--SSF56019,SUPERFAMILY--SSF57667, at 728,608 to 730,842
12214
mRNA_3847: 12215 - Hypothetical Protein, at 732,647 to 733,359
12215
Group
Condition
mRNA
_3843
mRNA
_3844
mRNA
_3845
mRNA
_3846
mRNA
_3847
12211
12212
12213
12214
12215
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.2
-0.2
-0.1
-0.4
N.D.
ypd buoyancy
40 hrs High Buoyancy
+0.0
-0.3
-0.3
+0.0
N.D.
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.0
-0.0
-0.2
-0.1
N.D.
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.0
-0.1
+0.0
-0.1
N.D.
ypd buoyancy
40 hrs Low Buoyancy
-0.0
-0.1
+0.0
-0.1
N.D.
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.2
-0.2
+0.2
+0.2
N.D.
ypd buoyancy
40 hrs Median Buoyancy
-0.0
-0.1
+0.2
-0.1
N.D.
auxotrophy
YNB Glucose 75mM Methionine
-0.2
+0.2
+0.1
+0.1
N.D.
growth on ricinoleic acid
YNB Glucose
+0.0
+0.1
+0.0
+0.1
N.D.
auxotrophy
YNB Glucose 75mM Arginine
-0.2
+0.1
+0.5
-0.1
N.D.
facs on lipid accumulation
Sorted High BODIPY Gate
+0.2
+0.4
-0.2
-0.1
N.D.
growth on ypd
YPD
+0.3
+0.3
-0.3
-0.0
N.D.
auxotrophy
Dropout Complete
-0.1
+0.1
+0.4
-0.1
N.D.
growth on oleic acid
YNB Glucose
-0.1
+0.1
+0.2
+0.2
N.D.
auxotrophy
YNB Glucose
-0.2
-0.1
+0.6
+0.1
N.D.
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.1
+0.5
-0.1
+0.1
N.D.
ypd buoyancy
40 hrs No Buoyancy Separation
-0.3
+0.6
+0.3
+0.0
N.D.
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.2
+0.7
-0.3
+0.0
N.D.
growth on oleic acid
YNB Oleic Acid
-0.0
+0.4
+0.3
+0.0
N.D.
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.2
+0.4
+0.2
-0.0
N.D.
facs on lipid accumulation
Sorted No BODIPY Gate
+0.3
+0.3
+0.2
-0.0
N.D.
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