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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
12214 and 12215 are separated by 1804 nucleotides
12215 and 12216 are separated by 513 nucleotides
12216 and 12217 are separated by 360 nucleotides
12217 and 12218 are separated by 2497 nucleotides
mRNA_3846: 12214 - HMMPfam-HORMA domain-PF02301,HMMPfam-Zinc-finger double-stranded RNA-binding-PF12171,ProSitePatterns-Zinc finger C2H2 type domain signature.-PS00028,ProSiteProfiles-Zinc finger C2H2 type domain profile.-PS50157,ProSiteProfiles-HORMA domain profile.-PS50815,SMART-zinc finger-SM00355,SUPERFAMILY--SSF56019,SUPERFAMILY--SSF57667, at 728,608 to 730,842
12214
mRNA_3847: 12215 - Hypothetical Protein, at 732,647 to 733,359
12215
mRNA_3848: 12216 - KOG1817 Ribonuclease, at 733,873 to 734,892
12216
mRNA_3849: 12217 - Hypothetical Protein, at 735,253 to 736,177
12217
mRNA_3850: 12218 - BLAST Protein kinase-like domain protein [Cordyceps confrag..., at 738,675 to 741,507
12218
Group
Condition
mRNA
_3846
mRNA
_3847
mRNA
_3848
mRNA
_3849
mRNA
_3850
12214
12215
12216
12217
12218
growth on ypd
YPD
-0.0
N.D.
-0.8
-0.1
+0.1
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.1
N.D.
+0.0
-0.1
-0.2
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.0
N.D.
-0.4
+0.1
-0.0
facs on lipid accumulation
Sorted No BODIPY Gate
-0.0
N.D.
-0.1
+0.1
-0.2
ypd buoyancy
40 hrs Low Buoyancy
-0.1
N.D.
+0.3
-0.0
-0.2
auxotrophy
Dropout Complete
-0.1
N.D.
+0.3
-0.1
-0.1
auxotrophy
YNB Glucose
+0.1
N.D.
+0.3
-0.2
-0.2
auxotrophy
YNB Glucose 75mM Methionine
+0.1
N.D.
+0.3
-0.1
+0.1
ypd buoyancy
40 hrs Median Buoyancy
-0.1
N.D.
+0.4
+0.0
+0.1
ypd buoyancy
40 hrs No Buoyancy Separation
+0.0
N.D.
+0.0
+0.2
+0.2
ypd buoyancy
40 hrs High Buoyancy
+0.0
N.D.
+0.7
-0.2
-0.0
auxotrophy
YNB Glucose 75mM Arginine
-0.1
N.D.
+0.6
-0.2
+0.2
growth on oleic acid
YNB Oleic Acid
+0.0
N.D.
+0.3
+0.0
+0.3
facs on lipid accumulation
Sorted High BODIPY Gate
-0.1
N.D.
+0.4
+0.4
+0.2
growth on oleic acid
YNB Glucose
+0.2
N.D.
+0.4
+0.0
+0.2
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.0
N.D.
+0.3
-0.1
+0.7
growth on ricinoleic acid
YNB Glucose
+0.1
N.D.
+0.7
-0.1
+0.4
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.4
N.D.
+1.6
-0.1
+0.4
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.1
N.D.
+1.4
-0.1
+0.5
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.1
N.D.
+1.5
-0.0
+0.6
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.2
N.D.
+1.6
-0.0
+0.6
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