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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
12216 and 12217 are separated by 360 nucleotides
12217 and 12218 are separated by 2497 nucleotides
12218 and 12219 are separated by 547 nucleotides
12219 and 12220 are separated by 273 nucleotides
mRNA_3848: 12216 - KOG1817 Ribonuclease, at 733,873 to 734,892
12216
mRNA_3849: 12217 - Hypothetical Protein, at 735,253 to 736,177
12217
mRNA_3850: 12218 - BLAST Protein kinase-like domain protein [Cordyceps confrag..., at 738,675 to 741,507
12218
mRNA_3851: 12219 - HMMPfam-Major Facilitator Superfamily-PF07690,ProSiteProfiles-Major facilitator superfamily (MFS) profile.-PS50850,SUPERFAMILY--SSF103473, at 742,055 to 744,016
12219
mRNA_3852: 12220 - HMMPfam-Glutathione S-transferase, C-terminal domain-PF00043,HMMPfam-Glutathione S-transferase, N-terminal domain-PF13417,ProSiteProfiles-Soluble glutathione S-transferase N-terminal domain profile.-PS50404,ProSiteProfiles-Soluble glutathione S-transferase C-terminal domain profile.-PS50405,SUPERFAMILY--SSF47616,SUPERFAMILY--SSF52833, at 744,290 to 745,525
12220
Group
Condition
mRNA
_3848
mRNA
_3849
mRNA
_3850
mRNA
_3851
mRNA
_3852
12216
12217
12218
12219
12220
growth on ypd
YPD
-0.8
-0.1
+0.1
-0.2
-0.4
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.0
-0.1
-0.2
+0.2
-0.6
ypd buoyancy
40 hrs No Buoyancy Separation
+0.0
+0.2
+0.2
-0.4
-0.4
facs on lipid accumulation
Sorted No BODIPY Gate
-0.1
+0.1
-0.2
+0.0
-0.0
growth on oleic acid
YNB Glucose
+0.4
+0.0
+0.2
-0.5
-0.3
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.4
+0.1
-0.0
+0.0
+0.3
ypd buoyancy
40 hrs Low Buoyancy
+0.3
-0.0
-0.2
+0.0
-0.0
auxotrophy
YNB Glucose 75mM Methionine
+0.3
-0.1
+0.1
+0.1
-0.2
ypd buoyancy
40 hrs Median Buoyancy
+0.4
+0.0
+0.1
-0.0
-0.2
growth on oleic acid
YNB Oleic Acid
+0.3
+0.0
+0.3
-0.1
-0.2
auxotrophy
Dropout Complete
+0.3
-0.1
-0.1
+0.5
-0.1
ypd buoyancy
40 hrs High Buoyancy
+0.7
-0.2
-0.0
+0.2
-0.1
auxotrophy
YNB Glucose
+0.3
-0.2
-0.2
+0.6
+0.0
auxotrophy
YNB Glucose 75mM Arginine
+0.6
-0.2
+0.2
+0.3
-0.0
facs on lipid accumulation
Sorted High BODIPY Gate
+0.4
+0.4
+0.2
+0.5
-0.5
growth on ricinoleic acid
YNB Glucose
+0.7
-0.1
+0.4
+0.1
-0.1
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.3
-0.1
+0.7
+0.1
+0.0
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+1.6
-0.1
+0.4
-0.5
+0.1
buoyancy on lipid accumulation
40 hrs High Buoyancy
+1.4
-0.1
+0.5
+0.4
-0.1
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+1.6
-0.0
+0.6
+0.2
+0.2
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+1.5
-0.0
+0.6
+0.6
+0.0
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