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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
12218 and 12219 are separated by 547 nucleotides
12219 and 12220 are separated by 273 nucleotides
12220 and 12221 are separated by 678 nucleotides
12221 and 12222 are separated by 747 nucleotides
mRNA_3850: 12218 - BLAST Protein kinase-like domain protein [Cordyceps confrag..., at 738,675 to 741,507
12218
mRNA_3851: 12219 - HMMPfam-Major Facilitator Superfamily-PF07690,ProSiteProfiles-Major facilitator superfamily (MFS) profile.-PS50850,SUPERFAMILY--SSF103473, at 742,055 to 744,016
12219
mRNA_3852: 12220 - HMMPfam-Glutathione S-transferase, C-terminal domain-PF00043,HMMPfam-Glutathione S-transferase, N-terminal domain-PF13417,ProSiteProfiles-Soluble glutathione S-transferase N-terminal domain profile.-PS50404,ProSiteProfiles-Soluble glutathione S-transferase C-terminal domain profile.-PS50405,SUPERFAMILY--SSF47616,SUPERFAMILY--SSF52833, at 744,290 to 745,525
12220
mRNA_3853: 12221 - K08193 SLC17A MFS transporter, ACS family, solute carrier family 17 (sodium-dependent inorganic phosphate cotransporter), other, at 746,204 to 748,742
12221
mRNA_3854: 12222 - Hypothetical Protein, at 749,490 to 750,342
12222
Group
Condition
mRNA
_3850
mRNA
_3851
mRNA
_3852
mRNA
_3853
mRNA
_3854
12218
12219
12220
12221
12222
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.2
+0.2
-0.6
-0.2
-0.9
growth on oleic acid
YNB Glucose
+0.2
-0.5
-0.3
-0.2
-0.4
ypd buoyancy
40 hrs Low Buoyancy
-0.2
+0.0
-0.0
-0.1
-0.7
ypd buoyancy
40 hrs No Buoyancy Separation
+0.2
-0.4
-0.4
-0.2
-0.1
growth on ypd
YPD
+0.1
-0.2
-0.4
-0.2
-0.2
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.4
-0.5
+0.1
-0.1
-0.7
facs on lipid accumulation
Sorted High BODIPY Gate
+0.2
+0.5
-0.5
+0.1
-0.6
auxotrophy
YNB Glucose 75mM Methionine
+0.1
+0.1
-0.2
+0.0
-0.3
growth on ricinoleic acid
YNB Glucose
+0.4
+0.1
-0.1
-0.2
-0.4
growth on oleic acid
YNB Oleic Acid
+0.3
-0.1
-0.2
-0.1
-0.2
ypd buoyancy
40 hrs Median Buoyancy
+0.1
-0.0
-0.2
+0.1
-0.0
facs on lipid accumulation
Sorted No BODIPY Gate
-0.2
+0.0
-0.0
+0.5
-0.4
auxotrophy
YNB Glucose 75mM Arginine
+0.2
+0.3
-0.0
+0.1
-0.5
ypd buoyancy
40 hrs High Buoyancy
-0.0
+0.2
-0.1
+0.0
+0.0
auxotrophy
YNB Glucose
-0.2
+0.6
+0.0
-0.0
-0.3
auxotrophy
Dropout Complete
-0.1
+0.5
-0.1
-0.1
-0.1
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.0
+0.0
+0.3
+0.6
-0.6
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.5
+0.4
-0.1
-0.0
-0.4
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.6
+0.2
+0.2
+0.2
-0.7
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.7
+0.1
+0.0
+0.2
-0.5
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.6
+0.6
+0.0
+0.2
-0.7
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