Fitness for 5 genes in Rhodosporidium toruloides IFO0880

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Top 21 experiments (either direction), sorted by average fitness

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500 nt 12218 and 12219 are separated by 547 nucleotides12219 and 12220 are separated by 273 nucleotides12220 and 12221 are separated by 678 nucleotides12221 and 12222 are separated by 747 nucleotides mRNA_3850: 12218 - BLAST Protein kinase-like domain protein [Cordyceps confrag..., at 738,675 to 741,507 12218 mRNA_3851: 12219 - HMMPfam-Major Facilitator Superfamily-PF07690,ProSiteProfiles-Major facilitator superfamily (MFS) profile.-PS50850,SUPERFAMILY--SSF103473, at 742,055 to 744,016 12219 mRNA_3852: 12220 - HMMPfam-Glutathione S-transferase, C-terminal domain-PF00043,HMMPfam-Glutathione S-transferase, N-terminal domain-PF13417,ProSiteProfiles-Soluble glutathione S-transferase N-terminal domain profile.-PS50404,ProSiteProfiles-Soluble glutathione S-transferase C-terminal domain profile.-PS50405,SUPERFAMILY--SSF47616,SUPERFAMILY--SSF52833, at 744,290 to 745,525 12220 mRNA_3853: 12221 - K08193 SLC17A MFS transporter, ACS family, solute carrier family 17 (sodium-dependent inorganic phosphate cotransporter), other, at 746,204 to 748,742 12221 mRNA_3854: 12222 - Hypothetical Protein, at 749,490 to 750,342 12222
Group Condition mRNA_3850 mRNA_3851 mRNA_3852 mRNA_3853 mRNA_3854
12218 12219 12220 12221 12222
growth on ricinoleic acid YNB Methylricinoleic Acid -0.2 +0.2 -0.6 -0.2 -0.9
growth on oleic acid YNB Glucose +0.2 -0.5 -0.3 -0.2 -0.4
ypd buoyancy 40 hrs Low Buoyancy -0.2 +0.0 -0.0 -0.1 -0.7
ypd buoyancy 40 hrs No Buoyancy Separation +0.2 -0.4 -0.4 -0.2 -0.1
growth on ypd YPD +0.1 -0.2 -0.4 -0.2 -0.2
buoyancy on lipid accumulation 40 hrs No Buoyancy Separation +0.4 -0.5 +0.1 -0.1 -0.7
facs on lipid accumulation Sorted High BODIPY Gate +0.2 +0.5 -0.5 +0.1 -0.6
auxotrophy YNB Glucose 75mM Methionine +0.1 +0.1 -0.2 +0.0 -0.3
growth on ricinoleic acid YNB Glucose +0.4 +0.1 -0.1 -0.2 -0.4
growth on oleic acid YNB Oleic Acid +0.3 -0.1 -0.2 -0.1 -0.2
ypd buoyancy 40 hrs Median Buoyancy +0.1 -0.0 -0.2 +0.1 -0.0
facs on lipid accumulation Sorted No BODIPY Gate -0.2 +0.0 -0.0 +0.5 -0.4
auxotrophy YNB Glucose 75mM Arginine +0.2 +0.3 -0.0 +0.1 -0.5
ypd buoyancy 40 hrs High Buoyancy -0.0 +0.2 -0.1 +0.0 +0.0
auxotrophy YNB Glucose -0.2 +0.6 +0.0 -0.0 -0.3
auxotrophy Dropout Complete -0.1 +0.5 -0.1 -0.1 -0.1
facs on lipid accumulation Sorted Low BODIPY Gate -0.0 +0.0 +0.3 +0.6 -0.6
buoyancy on lipid accumulation 40 hrs High Buoyancy +0.5 +0.4 -0.1 -0.0 -0.4
buoyancy on lipid accumulation 40 hrs Low Buoyancy +0.6 +0.2 +0.2 +0.2 -0.7
growth on ricinoleic acid YNB Ricinoleic Acid +0.7 +0.1 +0.0 +0.2 -0.5
buoyancy on lipid accumulation 40 hrs Median Buoyancy +0.6 +0.6 +0.0 +0.2 -0.7
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