Fitness for 5 genes in Rhodosporidium toruloides IFO0880

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Top 21 experiments (either direction), sorted by average fitness

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500 nt 12219 and 12220 are separated by 273 nucleotides12220 and 12221 are separated by 678 nucleotides12221 and 12222 are separated by 747 nucleotides12222 and 12223 are separated by 272 nucleotides mRNA_3851: 12219 - HMMPfam-Major Facilitator Superfamily-PF07690,ProSiteProfiles-Major facilitator superfamily (MFS) profile.-PS50850,SUPERFAMILY--SSF103473, at 742,055 to 744,016 12219 mRNA_3852: 12220 - HMMPfam-Glutathione S-transferase, C-terminal domain-PF00043,HMMPfam-Glutathione S-transferase, N-terminal domain-PF13417,ProSiteProfiles-Soluble glutathione S-transferase N-terminal domain profile.-PS50404,ProSiteProfiles-Soluble glutathione S-transferase C-terminal domain profile.-PS50405,SUPERFAMILY--SSF47616,SUPERFAMILY--SSF52833, at 744,290 to 745,525 12220 mRNA_3853: 12221 - K08193 SLC17A MFS transporter, ACS family, solute carrier family 17 (sodium-dependent inorganic phosphate cotransporter), other, at 746,204 to 748,742 12221 mRNA_3854: 12222 - Hypothetical Protein, at 749,490 to 750,342 12222 mRNA_3855: 12223 - SUPERFAMILY--SSF52047, at 750,615 to 752,769 12223
Group Condition mRNA_3851 mRNA_3852 mRNA_3853 mRNA_3854 mRNA_3855
12219 12220 12221 12222 12223
growth on oleic acid YNB Glucose -0.5 -0.3 -0.2 -0.4 -0.5
growth on ricinoleic acid YNB Methylricinoleic Acid +0.2 -0.6 -0.2 -0.9 -0.3
ypd buoyancy 40 hrs No Buoyancy Separation -0.4 -0.4 -0.2 -0.1 -0.5
growth on oleic acid YNB Oleic Acid -0.1 -0.2 -0.1 -0.2 -0.6
growth on ypd YPD -0.2 -0.4 -0.2 -0.2 -0.2
facs on lipid accumulation Sorted High BODIPY Gate +0.5 -0.5 +0.1 -0.6 -0.5
growth on ricinoleic acid YNB Glucose +0.1 -0.1 -0.2 -0.4 -0.3
buoyancy on lipid accumulation 40 hrs No Buoyancy Separation -0.5 +0.1 -0.1 -0.7 +0.3
ypd buoyancy 40 hrs Low Buoyancy +0.0 -0.0 -0.1 -0.7 +0.0
auxotrophy YNB Glucose 75mM Methionine +0.1 -0.2 +0.0 -0.3 -0.1
auxotrophy YNB Glucose 75mM Arginine +0.3 -0.0 +0.1 -0.5 -0.2
growth on ricinoleic acid YNB Ricinoleic Acid +0.1 +0.0 +0.2 -0.5 -0.1
facs on lipid accumulation Sorted No BODIPY Gate +0.0 -0.0 +0.5 -0.4 -0.4
ypd buoyancy 40 hrs Median Buoyancy -0.0 -0.2 +0.1 -0.0 +0.0
auxotrophy YNB Glucose +0.6 +0.0 -0.0 -0.3 -0.3
buoyancy on lipid accumulation 40 hrs Low Buoyancy +0.2 +0.2 +0.2 -0.7 +0.1
auxotrophy Dropout Complete +0.5 -0.1 -0.1 -0.1 -0.2
ypd buoyancy 40 hrs High Buoyancy +0.2 -0.1 +0.0 +0.0 +0.1
buoyancy on lipid accumulation 40 hrs High Buoyancy +0.4 -0.1 -0.0 -0.4 +0.4
buoyancy on lipid accumulation 40 hrs Median Buoyancy +0.6 +0.0 +0.2 -0.7 +0.1
facs on lipid accumulation Sorted Low BODIPY Gate +0.0 +0.3 +0.6 -0.6 +0.0
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