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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
12219 and 12220 are separated by 273 nucleotides
12220 and 12221 are separated by 678 nucleotides
12221 and 12222 are separated by 747 nucleotides
12222 and 12223 are separated by 272 nucleotides
mRNA_3851: 12219 - HMMPfam-Major Facilitator Superfamily-PF07690,ProSiteProfiles-Major facilitator superfamily (MFS) profile.-PS50850,SUPERFAMILY--SSF103473, at 742,055 to 744,016
12219
mRNA_3852: 12220 - HMMPfam-Glutathione S-transferase, C-terminal domain-PF00043,HMMPfam-Glutathione S-transferase, N-terminal domain-PF13417,ProSiteProfiles-Soluble glutathione S-transferase N-terminal domain profile.-PS50404,ProSiteProfiles-Soluble glutathione S-transferase C-terminal domain profile.-PS50405,SUPERFAMILY--SSF47616,SUPERFAMILY--SSF52833, at 744,290 to 745,525
12220
mRNA_3853: 12221 - K08193 SLC17A MFS transporter, ACS family, solute carrier family 17 (sodium-dependent inorganic phosphate cotransporter), other, at 746,204 to 748,742
12221
mRNA_3854: 12222 - Hypothetical Protein, at 749,490 to 750,342
12222
mRNA_3855: 12223 - SUPERFAMILY--SSF52047, at 750,615 to 752,769
12223
Group
Condition
mRNA
_3851
mRNA
_3852
mRNA
_3853
mRNA
_3854
mRNA
_3855
12219
12220
12221
12222
12223
growth on oleic acid
YNB Glucose
-0.5
-0.3
-0.2
-0.4
-0.5
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.2
-0.6
-0.2
-0.9
-0.3
ypd buoyancy
40 hrs No Buoyancy Separation
-0.4
-0.4
-0.2
-0.1
-0.5
growth on oleic acid
YNB Oleic Acid
-0.1
-0.2
-0.1
-0.2
-0.6
growth on ypd
YPD
-0.2
-0.4
-0.2
-0.2
-0.2
facs on lipid accumulation
Sorted High BODIPY Gate
+0.5
-0.5
+0.1
-0.6
-0.5
growth on ricinoleic acid
YNB Glucose
+0.1
-0.1
-0.2
-0.4
-0.3
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.5
+0.1
-0.1
-0.7
+0.3
ypd buoyancy
40 hrs Low Buoyancy
+0.0
-0.0
-0.1
-0.7
+0.0
auxotrophy
YNB Glucose 75mM Methionine
+0.1
-0.2
+0.0
-0.3
-0.1
auxotrophy
YNB Glucose 75mM Arginine
+0.3
-0.0
+0.1
-0.5
-0.2
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.1
+0.0
+0.2
-0.5
-0.1
facs on lipid accumulation
Sorted No BODIPY Gate
+0.0
-0.0
+0.5
-0.4
-0.4
ypd buoyancy
40 hrs Median Buoyancy
-0.0
-0.2
+0.1
-0.0
+0.0
auxotrophy
YNB Glucose
+0.6
+0.0
-0.0
-0.3
-0.3
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.2
+0.2
+0.2
-0.7
+0.1
auxotrophy
Dropout Complete
+0.5
-0.1
-0.1
-0.1
-0.2
ypd buoyancy
40 hrs High Buoyancy
+0.2
-0.1
+0.0
+0.0
+0.1
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.4
-0.1
-0.0
-0.4
+0.4
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.6
+0.0
+0.2
-0.7
+0.1
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.0
+0.3
+0.6
-0.6
+0.0
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