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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
12220 and 12221 are separated by 678 nucleotides
12221 and 12222 are separated by 747 nucleotides
12222 and 12223 are separated by 272 nucleotides
12223 and 12224 are separated by 151 nucleotides
mRNA_3852: 12220 - HMMPfam-Glutathione S-transferase, C-terminal domain-PF00043,HMMPfam-Glutathione S-transferase, N-terminal domain-PF13417,ProSiteProfiles-Soluble glutathione S-transferase N-terminal domain profile.-PS50404,ProSiteProfiles-Soluble glutathione S-transferase C-terminal domain profile.-PS50405,SUPERFAMILY--SSF47616,SUPERFAMILY--SSF52833, at 744,290 to 745,525
12220
mRNA_3853: 12221 - K08193 SLC17A MFS transporter, ACS family, solute carrier family 17 (sodium-dependent inorganic phosphate cotransporter), other, at 746,204 to 748,742
12221
mRNA_3854: 12222 - Hypothetical Protein, at 749,490 to 750,342
12222
mRNA_3855: 12223 - SUPERFAMILY--SSF52047, at 750,615 to 752,769
12223
mRNA_3856: 12224 - Hypothetical Protein, at 752,921 to 753,919
12224
Group
Condition
mRNA
_3852
mRNA
_3853
mRNA
_3854
mRNA
_3855
mRNA
_3856
12220
12221
12222
12223
12224
ypd buoyancy
40 hrs No Buoyancy Separation
-0.4
-0.2
-0.1
-0.5
-0.6
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.6
-0.2
-0.9
-0.3
+0.3
facs on lipid accumulation
Sorted High BODIPY Gate
-0.5
+0.1
-0.6
-0.5
+0.1
growth on oleic acid
YNB Glucose
-0.3
-0.2
-0.4
-0.5
-0.1
growth on ypd
YPD
-0.4
-0.2
-0.2
-0.2
-0.2
auxotrophy
YNB Glucose 75mM Methionine
-0.2
+0.0
-0.3
-0.1
-0.5
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.0
+0.2
-0.5
-0.1
-0.6
auxotrophy
YNB Glucose 75mM Arginine
-0.0
+0.1
-0.5
-0.2
-0.3
auxotrophy
YNB Glucose
+0.0
-0.0
-0.3
-0.3
-0.3
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.0
+0.2
-0.7
+0.1
-0.6
growth on oleic acid
YNB Oleic Acid
-0.2
-0.1
-0.2
-0.6
+0.1
growth on ricinoleic acid
YNB Glucose
-0.1
-0.2
-0.4
-0.3
+0.2
auxotrophy
Dropout Complete
-0.1
-0.1
-0.1
-0.2
-0.2
ypd buoyancy
40 hrs Low Buoyancy
-0.0
-0.1
-0.7
+0.0
+0.4
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.3
+0.6
-0.6
+0.0
-0.8
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.1
-0.1
-0.7
+0.3
+0.0
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.1
-0.0
-0.4
+0.4
-0.1
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.2
+0.2
-0.7
+0.1
+0.0
facs on lipid accumulation
Sorted No BODIPY Gate
-0.0
+0.5
-0.4
-0.4
+0.4
ypd buoyancy
40 hrs Median Buoyancy
-0.2
+0.1
-0.0
+0.0
+0.3
ypd buoyancy
40 hrs High Buoyancy
-0.1
+0.0
+0.0
+0.1
+0.5
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