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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
12223 and 12224 are separated by 151 nucleotides
12224 and 12225 are separated by 162 nucleotides
12225 and 12226 are separated by 602 nucleotides
12226 and 12227 are separated by 298 nucleotides
mRNA_3855: 12223 - SUPERFAMILY--SSF52047, at 750,615 to 752,769
12223
mRNA_3856: 12224 - Hypothetical Protein, at 752,921 to 753,919
12224
mRNA_3857: 12225 - Interpro Mysoin-binding motif of peroxisomes, at 754,082 to 757,282
12225
mRNA_3858: 12226 - K17890 ATG16L1 autophagy-related protein 16-1, at 757,885 to 761,783
12226
mRNA_3859: 12227 - HMMPfam-MYND finger-PF01753,SUPERFAMILY--SSF144232, at 762,082 to 763,041
12227
Group
Condition
mRNA
_3855
mRNA
_3856
mRNA
_3857
mRNA
_3858
mRNA
_3859
12223
12224
12225
12226
12227
ypd buoyancy
40 hrs No Buoyancy Separation
-0.5
-0.6
+0.6
-0.4
-0.5
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.0
-0.8
-0.6
+0.1
-0.1
facs on lipid accumulation
Sorted High BODIPY Gate
-0.5
+0.1
-0.6
-0.2
-0.1
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.1
-0.6
+0.3
+0.3
-0.5
growth on oleic acid
YNB Glucose
-0.5
-0.1
+0.1
-0.1
-0.0
auxotrophy
YNB Glucose
-0.3
-0.3
-0.3
-0.0
+0.4
auxotrophy
YNB Glucose 75mM Methionine
-0.1
-0.5
-0.1
+0.0
+0.3
facs on lipid accumulation
Sorted No BODIPY Gate
-0.4
+0.4
-0.3
-0.1
-0.0
auxotrophy
YNB Glucose 75mM Arginine
-0.2
-0.3
-0.4
+0.1
+0.4
growth on ypd
YPD
-0.2
-0.2
-0.3
+0.1
+0.1
auxotrophy
Dropout Complete
-0.2
-0.2
-0.5
+0.2
+0.4
growth on oleic acid
YNB Oleic Acid
-0.6
+0.1
-0.1
-0.0
+0.4
ypd buoyancy
40 hrs High Buoyancy
+0.1
+0.5
-0.1
-0.3
-0.3
ypd buoyancy
40 hrs Median Buoyancy
+0.0
+0.3
-0.0
-0.2
-0.2
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.1
-0.6
+0.0
+0.1
+0.4
growth on ricinoleic acid
YNB Glucose
-0.3
+0.2
-0.0
+0.1
+0.1
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.3
+0.3
+0.2
-0.1
+0.3
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.3
+0.0
-0.3
+0.1
+0.4
ypd buoyancy
40 hrs Low Buoyancy
+0.0
+0.4
+0.2
-0.1
-0.1
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.1
+0.0
+0.0
-0.2
+0.5
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.4
-0.1
+0.2
+0.3
+0.6
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