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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
12226 and 12227 are separated by 298 nucleotides
12227 and 12228 are separated by 359 nucleotides
12228 and 12229 are separated by 454 nucleotides
12229 and 12230 are separated by 217 nucleotides
mRNA_3858: 12226 - K17890 ATG16L1 autophagy-related protein 16-1, at 757,885 to 761,783
12226
mRNA_3859: 12227 - HMMPfam-MYND finger-PF01753,SUPERFAMILY--SSF144232, at 762,082 to 763,041
12227
mRNA_3860: 12228 - HMMPfam-MYND finger-PF01753,SUPERFAMILY--SSF144232, at 763,401 to 765,833
12228
mRNA_3861: 12229 - HMMPfam-MYND finger-PF01753,SUPERFAMILY--SSF144232, at 766,288 to 767,441
12229
mRNA_3862: 12230 - SUPERFAMILY--SSF52047, at 767,659 to 769,319
12230
Group
Condition
mRNA
_3858
mRNA
_3859
mRNA
_3860
mRNA
_3861
mRNA
_3862
12226
12227
12228
12229
12230
ypd buoyancy
40 hrs No Buoyancy Separation
-0.4
-0.5
-0.0
-0.9
-0.8
ypd buoyancy
40 hrs Median Buoyancy
-0.2
-0.2
+0.1
-0.2
-0.1
ypd buoyancy
40 hrs High Buoyancy
-0.3
-0.3
+0.1
-0.1
-0.1
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.1
-0.1
+0.1
+0.3
-0.5
ypd buoyancy
40 hrs Low Buoyancy
-0.1
-0.1
+0.0
-0.1
+0.2
growth on ypd
YPD
+0.1
+0.1
-0.2
+0.2
-0.1
facs on lipid accumulation
Sorted No BODIPY Gate
-0.1
-0.0
-0.1
+0.5
-0.1
growth on oleic acid
YNB Glucose
-0.1
-0.0
+0.2
-0.0
+0.3
facs on lipid accumulation
Sorted High BODIPY Gate
-0.2
-0.1
+0.0
+0.3
+0.2
auxotrophy
YNB Glucose 75mM Methionine
+0.0
+0.3
+0.1
+0.2
-0.1
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.2
+0.5
+0.1
+0.3
-0.3
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.3
-0.5
-0.0
+0.2
+0.6
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.1
+0.3
-0.1
+0.2
+0.4
auxotrophy
YNB Glucose 75mM Arginine
+0.1
+0.4
+0.0
+0.2
-0.1
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.1
+0.4
+0.1
+0.1
+0.0
auxotrophy
YNB Glucose
-0.0
+0.4
+0.0
+0.2
+0.1
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.1
+0.4
+0.2
+0.4
-0.2
growth on oleic acid
YNB Oleic Acid
-0.0
+0.4
+0.1
+0.1
+0.2
growth on ricinoleic acid
YNB Glucose
+0.1
+0.1
+0.1
+0.4
+0.4
auxotrophy
Dropout Complete
+0.2
+0.4
+0.1
+0.4
+0.3
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.3
+0.6
+0.1
+0.4
+0.1
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