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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
12228 and 12229 are separated by 454 nucleotides
12229 and 12230 are separated by 217 nucleotides
12230 and 12231 are separated by 501 nucleotides
12231 and 12232 are separated by 305 nucleotides
mRNA_3860: 12228 - HMMPfam-MYND finger-PF01753,SUPERFAMILY--SSF144232, at 763,401 to 765,833
12228
mRNA_3861: 12229 - HMMPfam-MYND finger-PF01753,SUPERFAMILY--SSF144232, at 766,288 to 767,441
12229
mRNA_3862: 12230 - SUPERFAMILY--SSF52047, at 767,659 to 769,319
12230
mRNA_3863: 12231 - KOG1434 Meiotic recombination protein Dmc1, at 769,821 to 771,118
12231
mRNA_3864: 12232 - K08737 MSH6 DNA mismatch repair protein MSH6, at 771,424 to 775,679
12232
Group
Condition
mRNA
_3860
mRNA
_3861
mRNA
_3862
mRNA
_3863
mRNA
_3864
12228
12229
12230
12231
12232
ypd buoyancy
40 hrs No Buoyancy Separation
-0.0
-0.9
-0.8
N.D.
+0.1
ypd buoyancy
40 hrs Median Buoyancy
+0.1
-0.2
-0.1
N.D.
+0.1
growth on ypd
YPD
-0.2
+0.2
-0.1
N.D.
-0.1
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.1
+0.3
-0.5
N.D.
+0.1
ypd buoyancy
40 hrs High Buoyancy
+0.1
-0.1
-0.1
N.D.
+0.2
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.1
+0.1
+0.0
N.D.
-0.1
ypd buoyancy
40 hrs Low Buoyancy
+0.0
-0.1
+0.2
N.D.
+0.1
auxotrophy
YNB Glucose 75mM Arginine
+0.0
+0.2
-0.1
N.D.
+0.1
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.1
+0.3
-0.3
N.D.
+0.2
facs on lipid accumulation
Sorted No BODIPY Gate
-0.1
+0.5
-0.1
N.D.
-0.0
auxotrophy
YNB Glucose 75mM Methionine
+0.1
+0.2
-0.1
N.D.
+0.1
auxotrophy
YNB Glucose
+0.0
+0.2
+0.1
N.D.
+0.0
growth on oleic acid
YNB Glucose
+0.2
-0.0
+0.3
N.D.
-0.0
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.2
+0.4
-0.2
N.D.
+0.1
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.1
+0.2
+0.4
N.D.
+0.1
growth on oleic acid
YNB Oleic Acid
+0.1
+0.1
+0.2
N.D.
+0.1
facs on lipid accumulation
Sorted High BODIPY Gate
+0.0
+0.3
+0.2
N.D.
+0.1
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.1
+0.4
+0.1
N.D.
+0.1
growth on ricinoleic acid
YNB Glucose
+0.1
+0.4
+0.4
N.D.
+0.1
auxotrophy
Dropout Complete
+0.1
+0.4
+0.3
N.D.
+0.0
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.0
+0.2
+0.6
N.D.
+0.3
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