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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
12229 and 12230 are separated by 217 nucleotides
12230 and 12231 are separated by 501 nucleotides
12231 and 12232 are separated by 305 nucleotides
12232 and 12233 are separated by 1356 nucleotides
mRNA_3861: 12229 - HMMPfam-MYND finger-PF01753,SUPERFAMILY--SSF144232, at 766,288 to 767,441
12229
mRNA_3862: 12230 - SUPERFAMILY--SSF52047, at 767,659 to 769,319
12230
mRNA_3863: 12231 - KOG1434 Meiotic recombination protein Dmc1, at 769,821 to 771,118
12231
mRNA_3864: 12232 - K08737 MSH6 DNA mismatch repair protein MSH6, at 771,424 to 775,679
12232
mRNA_3865: 12233 - HMMPfam-DASH complex subunit Spc34-PF08657, at 777,036 to 778,951
12233
Group
Condition
mRNA
_3861
mRNA
_3862
mRNA
_3863
mRNA
_3864
mRNA
_3865
12229
12230
12231
12232
12233
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.3
-0.5
N.D.
+0.1
-1.8
ypd buoyancy
40 hrs No Buoyancy Separation
-0.9
-0.8
N.D.
+0.1
+0.1
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.1
+0.0
N.D.
-0.1
-1.1
auxotrophy
Dropout Complete
+0.4
+0.3
N.D.
+0.0
-1.5
facs on lipid accumulation
Sorted High BODIPY Gate
+0.3
+0.2
N.D.
+0.1
-1.4
facs on lipid accumulation
Sorted No BODIPY Gate
+0.5
-0.1
N.D.
-0.0
-1.1
auxotrophy
YNB Glucose 75mM Arginine
+0.2
-0.1
N.D.
+0.1
-0.8
auxotrophy
YNB Glucose 75mM Methionine
+0.2
-0.1
N.D.
+0.1
-0.8
auxotrophy
YNB Glucose
+0.2
+0.1
N.D.
+0.0
-0.7
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.2
+0.4
N.D.
+0.1
-0.8
ypd buoyancy
40 hrs High Buoyancy
-0.1
-0.1
N.D.
+0.2
-0.1
growth on ricinoleic acid
YNB Glucose
+0.4
+0.4
N.D.
+0.1
-0.9
ypd buoyancy
40 hrs Low Buoyancy
-0.1
+0.2
N.D.
+0.1
-0.3
ypd buoyancy
40 hrs Median Buoyancy
-0.2
-0.1
N.D.
+0.1
+0.2
growth on oleic acid
YNB Glucose
-0.0
+0.3
N.D.
-0.0
+0.0
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.2
+0.6
N.D.
+0.3
-0.8
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.4
-0.2
N.D.
+0.1
+0.1
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.4
+0.1
N.D.
+0.1
-0.0
growth on ypd
YPD
+0.2
-0.1
N.D.
-0.1
+0.7
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.3
-0.3
N.D.
+0.2
+0.6
growth on oleic acid
YNB Oleic Acid
+0.1
+0.2
N.D.
+0.1
+0.6
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