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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
12232 and 12233 are separated by 1356 nucleotides
12233 and 12234 are separated by 1688 nucleotides
12234 and 12235 are separated by 1159 nucleotides
12235 and 12236 are separated by 254 nucleotides
mRNA_3864: 12232 - K08737 MSH6 DNA mismatch repair protein MSH6, at 771,424 to 775,679
12232
mRNA_3865: 12233 - HMMPfam-DASH complex subunit Spc34-PF08657, at 777,036 to 778,951
12233
mRNA_3866: 12234 - Hypothetical Protein, at 780,640 to 781,665
12234
mRNA_3867: 12235 - KOG1812 Predicted E3 ubiquitin ligase, at 782,825 to 783,717
12235
mRNA_3868: 12236 - KOG0603 Ribosomal protein S6 kinase, at 783,972 to 787,068
12236
Group
Condition
mRNA
_3864
mRNA
_3865
mRNA
_3866
mRNA
_3867
mRNA
_3868
12232
12233
12234
12235
12236
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.1
-1.8
N.D.
-0.5
+0.5
facs on lipid accumulation
Sorted High BODIPY Gate
+0.1
-1.4
N.D.
-0.2
-0.0
auxotrophy
Dropout Complete
+0.0
-1.5
N.D.
+0.5
-0.0
growth on ricinoleic acid
YNB Glucose
+0.1
-0.9
N.D.
-0.2
-0.1
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.1
-1.1
N.D.
+0.0
+0.1
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.1
-0.8
N.D.
-0.1
+0.1
auxotrophy
YNB Glucose 75mM Methionine
+0.1
-0.8
N.D.
+0.1
-0.2
auxotrophy
YNB Glucose
+0.0
-0.7
N.D.
+0.1
-0.0
growth on oleic acid
YNB Glucose
-0.0
+0.0
N.D.
-0.6
+0.1
facs on lipid accumulation
Sorted No BODIPY Gate
-0.0
-1.1
N.D.
+0.3
+0.4
auxotrophy
YNB Glucose 75mM Arginine
+0.1
-0.8
N.D.
+0.3
+0.1
ypd buoyancy
40 hrs No Buoyancy Separation
+0.1
+0.1
N.D.
+0.0
-0.3
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.3
-0.8
N.D.
+0.2
+0.3
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.1
+0.1
N.D.
-0.1
-0.2
growth on oleic acid
YNB Oleic Acid
+0.1
+0.6
N.D.
-0.8
+0.3
growth on ypd
YPD
-0.1
+0.7
N.D.
-0.4
-0.0
ypd buoyancy
40 hrs High Buoyancy
+0.2
-0.1
N.D.
+0.4
-0.2
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.1
-0.0
N.D.
+0.1
+0.2
ypd buoyancy
40 hrs Low Buoyancy
+0.1
-0.3
N.D.
+0.5
+0.2
ypd buoyancy
40 hrs Median Buoyancy
+0.1
+0.2
N.D.
+0.4
-0.1
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.2
+0.6
N.D.
+0.1
+0.1
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