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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
12234 and 12235 are separated by 1159 nucleotides
12235 and 12236 are separated by 254 nucleotides
12236 and 12237 are separated by 208 nucleotides
12237 and 12238 are separated by 293 nucleotides
mRNA_3866: 12234 - Hypothetical Protein, at 780,640 to 781,665
12234
mRNA_3867: 12235 - KOG1812 Predicted E3 ubiquitin ligase, at 782,825 to 783,717
12235
mRNA_3868: 12236 - KOG0603 Ribosomal protein S6 kinase, at 783,972 to 787,068
12236
mRNA_3869: 12237 - KOG3207 Beta-tubulin folding cofactor E, at 787,277 to 789,620
12237
mRNA_3870: 12238 - HMMPfam-Nucleotide-diphospho-sugar transferase-PF03407,SUPERFAMILY--SSF53448, at 789,914 to 792,634
12238
Group
Condition
mRNA
_3866
mRNA
_3867
mRNA
_3868
mRNA
_3869
mRNA
_3870
12234
12235
12236
12237
12238
ypd buoyancy
40 hrs No Buoyancy Separation
N.D.
+0.0
-0.3
-0.8
+0.1
growth on ypd
YPD
N.D.
-0.4
-0.0
-0.4
+0.0
growth on oleic acid
YNB Oleic Acid
N.D.
-0.8
+0.3
-0.2
-0.1
buoyancy on lipid accumulation
40 hrs Median Buoyancy
N.D.
-0.1
-0.2
-0.2
-0.4
growth on oleic acid
YNB Glucose
N.D.
-0.6
+0.1
-0.2
-0.1
facs on lipid accumulation
Sorted Low BODIPY Gate
N.D.
-0.5
+0.5
-0.2
-0.5
facs on lipid accumulation
Sorted High BODIPY Gate
N.D.
-0.2
-0.0
-0.4
-0.0
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
N.D.
+0.0
+0.1
-0.2
-0.5
growth on ricinoleic acid
YNB Glucose
N.D.
-0.2
-0.1
-0.1
-0.2
growth on ricinoleic acid
YNB Methylricinoleic Acid
N.D.
-0.1
+0.1
+0.1
-0.4
auxotrophy
YNB Glucose 75mM Methionine
N.D.
+0.1
-0.2
+0.2
-0.4
auxotrophy
YNB Glucose
N.D.
+0.1
-0.0
-0.1
-0.2
ypd buoyancy
40 hrs High Buoyancy
N.D.
+0.4
-0.2
-0.1
-0.2
buoyancy on lipid accumulation
40 hrs High Buoyancy
N.D.
+0.1
+0.2
-0.1
-0.2
buoyancy on lipid accumulation
40 hrs Low Buoyancy
N.D.
+0.1
+0.1
-0.2
-0.0
growth on ricinoleic acid
YNB Ricinoleic Acid
N.D.
+0.2
+0.3
+0.2
-0.7
auxotrophy
YNB Glucose 75mM Arginine
N.D.
+0.3
+0.1
-0.1
-0.2
auxotrophy
Dropout Complete
N.D.
+0.5
-0.0
+0.0
-0.2
ypd buoyancy
40 hrs Median Buoyancy
N.D.
+0.4
-0.1
-0.0
-0.1
ypd buoyancy
40 hrs Low Buoyancy
N.D.
+0.5
+0.2
+0.1
-0.3
facs on lipid accumulation
Sorted No BODIPY Gate
N.D.
+0.3
+0.4
-0.0
-0.2
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