Fitness for 5 genes in Rhodosporidium toruloides IFO0880

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Top 21 experiments (either direction), sorted by average fitness

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500 nt 12235 and 12236 are separated by 254 nucleotides12236 and 12237 are separated by 208 nucleotides12237 and 12238 are separated by 293 nucleotides12238 and 12239 are separated by 304 nucleotides mRNA_3867: 12235 - KOG1812 Predicted E3 ubiquitin ligase, at 782,825 to 783,717 12235 mRNA_3868: 12236 - KOG0603 Ribosomal protein S6 kinase, at 783,972 to 787,068 12236 mRNA_3869: 12237 - KOG3207 Beta-tubulin folding cofactor E, at 787,277 to 789,620 12237 mRNA_3870: 12238 - HMMPfam-Nucleotide-diphospho-sugar transferase-PF03407,SUPERFAMILY--SSF53448, at 789,914 to 792,634 12238 mRNA_3871: 12239 - K10295 FBXO9 F-box protein 9, at 792,939 to 793,930 12239
Group Condition mRNA_3867 mRNA_3868 mRNA_3869 mRNA_3870 mRNA_3871
12235 12236 12237 12238 12239
growth on oleic acid YNB Glucose -0.6 +0.1 -0.2 -0.1 -0.2
growth on ypd YPD -0.4 -0.0 -0.4 +0.0 -0.1
buoyancy on lipid accumulation 40 hrs Median Buoyancy -0.1 -0.2 -0.2 -0.4 -0.0
growth on oleic acid YNB Oleic Acid -0.8 +0.3 -0.2 -0.1 -0.0
ypd buoyancy 40 hrs No Buoyancy Separation +0.0 -0.3 -0.8 +0.1 +0.2
facs on lipid accumulation Sorted Low BODIPY Gate -0.5 +0.5 -0.2 -0.5 -0.0
buoyancy on lipid accumulation 40 hrs No Buoyancy Separation +0.0 +0.1 -0.2 -0.5 -0.0
growth on ricinoleic acid YNB Methylricinoleic Acid -0.1 +0.1 +0.1 -0.4 -0.2
facs on lipid accumulation Sorted High BODIPY Gate -0.2 -0.0 -0.4 -0.0 +0.1
growth on ricinoleic acid YNB Glucose -0.2 -0.1 -0.1 -0.2 +0.2
buoyancy on lipid accumulation 40 hrs Low Buoyancy +0.1 +0.1 -0.2 -0.0 -0.1
buoyancy on lipid accumulation 40 hrs High Buoyancy +0.1 +0.2 -0.1 -0.2 -0.1
ypd buoyancy 40 hrs High Buoyancy +0.4 -0.2 -0.1 -0.2 -0.0
auxotrophy YNB Glucose 75mM Methionine +0.1 -0.2 +0.2 -0.4 +0.2
auxotrophy YNB Glucose +0.1 -0.0 -0.1 -0.2 +0.3
auxotrophy YNB Glucose 75mM Arginine +0.3 +0.1 -0.1 -0.2 +0.1
ypd buoyancy 40 hrs Median Buoyancy +0.4 -0.1 -0.0 -0.1 -0.0
growth on ricinoleic acid YNB Ricinoleic Acid +0.2 +0.3 +0.2 -0.7 +0.3
auxotrophy Dropout Complete +0.5 -0.0 +0.0 -0.2 +0.1
ypd buoyancy 40 hrs Low Buoyancy +0.5 +0.2 +0.1 -0.3 +0.0
facs on lipid accumulation Sorted No BODIPY Gate +0.3 +0.4 -0.0 -0.2 +0.2
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