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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
12238 and 12239 are separated by 304 nucleotides
12239 and 12240 are separated by 925 nucleotides
12240 and 12241 are separated by 196 nucleotides
12241 and 12242 are separated by 71 nucleotides
mRNA_3870: 12238 - HMMPfam-Nucleotide-diphospho-sugar transferase-PF03407,SUPERFAMILY--SSF53448, at 789,914 to 792,634
12238
mRNA_3871: 12239 - K10295 FBXO9 F-box protein 9, at 792,939 to 793,930
12239
mRNA_3872: 12240 - KOG1001 Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily, at 794,856 to 799,909
12240
mRNA_3873: 12241 - BLAST putative protein [Neurospora crassa], at 800,106 to 800,939
12241
mRNA_3874: 12242 - KOG1535 Predicted fumarylacetoacetate hydralase, at 801,011 to 802,122
12242
Group
Condition
mRNA
_3870
mRNA
_3871
mRNA
_3872
mRNA
_3873
mRNA
_3874
12238
12239
12240
12241
12242
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.5
-0.0
-0.3
-0.8
-0.2
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.5
-0.0
-0.0
-0.1
-0.5
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.4
-0.2
-0.3
+0.2
-0.2
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.4
-0.0
-0.2
+0.5
-0.5
growth on oleic acid
YNB Glucose
-0.1
-0.2
-0.3
+0.2
-0.3
growth on ricinoleic acid
YNB Glucose
-0.2
+0.2
-0.2
+0.0
-0.4
auxotrophy
YNB Glucose 75mM Methionine
-0.4
+0.2
-0.1
+0.2
-0.3
growth on ypd
YPD
+0.0
-0.1
-0.2
+0.0
-0.2
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.0
-0.1
+0.1
+0.3
-0.8
ypd buoyancy
40 hrs No Buoyancy Separation
+0.1
+0.2
+0.3
-0.5
-0.5
growth on oleic acid
YNB Oleic Acid
-0.1
-0.0
-0.1
+0.2
-0.4
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.7
+0.3
-0.4
+0.3
+0.2
auxotrophy
Dropout Complete
-0.2
+0.1
-0.0
+0.1
-0.2
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.2
-0.1
+0.2
+0.4
-0.4
facs on lipid accumulation
Sorted High BODIPY Gate
-0.0
+0.1
-0.0
-0.2
+0.1
auxotrophy
YNB Glucose 75mM Arginine
-0.2
+0.1
-0.0
+0.3
-0.1
auxotrophy
YNB Glucose
-0.2
+0.3
+0.1
+0.2
-0.2
ypd buoyancy
40 hrs Low Buoyancy
-0.3
+0.0
-0.1
+0.4
+0.2
ypd buoyancy
40 hrs Median Buoyancy
-0.1
-0.0
+0.1
+0.2
+0.1
facs on lipid accumulation
Sorted No BODIPY Gate
-0.2
+0.2
+0.1
-0.1
+0.4
ypd buoyancy
40 hrs High Buoyancy
-0.2
-0.0
+0.1
+0.4
+0.2
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