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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
12241 and 12242 are separated by 71 nucleotides
12242 and 12243 are separated by 318 nucleotides
12243 and 12244 are separated by 425 nucleotides
12244 and 12245 are separated by 417 nucleotides
mRNA_3873: 12241 - BLAST putative protein [Neurospora crassa], at 800,106 to 800,939
12241
mRNA_3874: 12242 - KOG1535 Predicted fumarylacetoacetate hydralase, at 801,011 to 802,122
12242
mRNA_3875: 12243 - KOG2614 Kynurenine 3-monooxygenase and related flavoprotein monooxygenases, at 802,441 to 804,314
12243
mRNA_3876: 12244 - KOG0255 Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily), at 804,740 to 806,816
12244
mRNA_3877: 12245 - BLAST putative protein [Melanopsichium pennsylvanicum 4], at 807,234 to 808,789
12245
Group
Condition
mRNA
_3873
mRNA
_3874
mRNA
_3875
mRNA
_3876
mRNA
_3877
12241
12242
12243
12244
12245
ypd buoyancy
40 hrs No Buoyancy Separation
-0.5
-0.5
-0.3
-1.3
N.D.
growth on ypd
YPD
+0.0
-0.2
-0.0
-0.9
N.D.
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.8
-0.2
-0.1
-0.1
N.D.
facs on lipid accumulation
Sorted High BODIPY Gate
-0.2
+0.1
+0.2
-0.6
N.D.
auxotrophy
YNB Glucose 75mM Methionine
+0.2
-0.3
+0.4
-0.5
N.D.
ypd buoyancy
40 hrs Median Buoyancy
+0.2
+0.1
-0.3
-0.4
N.D.
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.2
-0.2
+0.0
-0.2
N.D.
auxotrophy
YNB Glucose 75mM Arginine
+0.3
-0.1
+0.3
-0.7
N.D.
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.4
-0.4
+0.2
-0.3
N.D.
growth on oleic acid
YNB Glucose
+0.2
-0.3
+0.0
+0.0
N.D.
growth on ricinoleic acid
YNB Glucose
+0.0
-0.4
+0.3
+0.0
N.D.
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.3
-0.8
+0.5
+0.1
N.D.
growth on oleic acid
YNB Oleic Acid
+0.2
-0.4
+0.2
+0.0
N.D.
ypd buoyancy
40 hrs Low Buoyancy
+0.4
+0.2
-0.3
-0.2
N.D.
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.5
-0.5
+0.5
-0.3
N.D.
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.1
-0.5
+0.5
+0.4
N.D.
auxotrophy
YNB Glucose
+0.2
-0.2
+0.6
-0.3
N.D.
auxotrophy
Dropout Complete
+0.1
-0.2
+0.5
-0.0
N.D.
facs on lipid accumulation
Sorted No BODIPY Gate
-0.1
+0.4
-0.0
+0.2
N.D.
ypd buoyancy
40 hrs High Buoyancy
+0.4
+0.2
+0.1
-0.0
N.D.
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.3
+0.2
+0.0
+0.5
N.D.
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